human nuclear pre-60S ribosomal particle - State G
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B [auth 6] | SCOP2B Superfamily | Pentein | 8098764 | 3000640 | SCOP2B (2022-06-29) |
| E [auth 9] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8036154 | 3001077 | SCOP2B (2022-06-29) |
| G [auth C] | SCOP2B Superfamily | Ribosomal protein L29e | 8053036 | 3002157 | SCOP2B (2022-06-29) |
| H [auth D] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052831 | 3002143 | SCOP2B (2022-06-29) |
| H [auth D] | SCOP2B Superfamily | Ribosomal protein L4 | 8052832 | 3001146 | SCOP2B (2022-06-29) |
| I [auth E] | SCOP2B Superfamily | L30e-like | 8077491 | 3001739 | SCOP2B (2022-06-29) |
| J [auth F] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053540 | 3002203 | SCOP2B (2022-06-29) |
| M [auth I] | SCOP2B Superfamily | Ribosomal protein L6 | 8033688 | 3000724 | SCOP2B (2022-06-29) |
| N [auth K] | SCOP2B Superfamily | Ribosomal protein L36e | 8053120 | 3002161 | SCOP2B (2022-06-29) |
| O [auth L] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077123 | 3001045 | SCOP2B (2022-06-29) |
| Q [auth N] | SCOP2B Superfamily | RL5-like | 8073892 | 3001709 | SCOP2B (2022-06-29) |
| R [auth O] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053567 | 3002206 | SCOP2B (2022-06-29) |
| S [auth P] | SCOP2B Superfamily | Ribosomal protein L39e | 8095603 | 3001756 | SCOP2B (2022-06-29) |
| T [auth Q] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053155 | 3002162 | SCOP2B (2022-06-29) |
| V [auth U] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8098812 | 3000210 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095977 | 3001045 | SCOP2B (2022-06-29) |
| DA [auth e] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072050 | 3000433 | SCOP2B (2022-06-29) |
| GA [auth i] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053050 | 3000334 | SCOP2B (2022-06-29) |
| JA [auth n] | SCOP2B Superfamily | Translational proteins | 8087455 | 3000811 | SCOP2B (2022-06-29) |
| KA [auth o] | SCOP2B Superfamily | Ribosomal protein L6e, N-terminal domain | 8053099 | 3002160 | SCOP2B (2022-06-29) |
| KA [auth o] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053100 | 3000334 | SCOP2B (2022-06-29) |
| LA [auth p] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052923 | 3001378 | SCOP2B (2022-06-29) |
| LA [auth p] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052922 | 3002152 | SCOP2B (2022-06-29) |
| MA [auth r] | SCOP2B Superfamily | Translational machinery components | 8052887 | 3000571 | SCOP2B (2022-06-29) |
| UA [auth d] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053060 | 3002158 | SCOP2B (2022-06-29) |
| F [auth B] | SCOP2B Superfamily | Translational proteins | 8078351 | 3000811 | SCOP2B (2022-06-29) |
| XA [auth Y] | SCOP2B Superfamily | Ribosomal protein L22 | 8076704 | 3001078 | SCOP2B (2022-06-29) |
| FA [auth h] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076756 | 3000334 | SCOP2B (2022-06-29) |
| EA [auth g] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095967 | 3000210 | SCOP2B (2022-06-29) |
| Y [auth X] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101551 | 3001320 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth 6] | WD40,CAF1C_H4-bd | e8idt61 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| G [auth C] | WD40,CAF1C_H4-bd | e8idtC1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| H [auth D] | WD40,CAF1C_H4-bd | e8idtD1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| I [auth E] | WD40,CAF1C_H4-bd | e8idtE1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| J [auth F] | Cullin_AB | e8idtF1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Cullin_AB | ECOD (develop294) |
| L [auth H] | WD40,CAF1C_H4-bd | e8idtH1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| M [auth I] | WD40,CAF1C_H4-bd | e8idtI1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| N [auth K] | WD40,CAF1C_H4-bd | e8idtK1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| O [auth L] | WD40,CAF1C_H4-bd | e8idtL1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| P [auth M] | WD40,CAF1C_H4-bd | e8idtM1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| Q [auth N] | WD40,CAF1C_H4-bd | e8idtN1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| R [auth O] | WD40,CAF1C_H4-bd | e8idtO1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| S [auth P] | WD40,CAF1C_H4-bd | e8idtP1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| T [auth Q] | WD40,CAF1C_H4-bd | e8idtQ1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| V [auth U] | WD40,CAF1C_H4-bd | e8idtU1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| W [auth V] | WD40,CAF1C_H4-bd | e8idtV1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| Z | WD40,CAF1C_H4-bd | e8idtZ1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| DA [auth e] | WD40,CAF1C_H4-bd | e8idte1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| GA [auth i] | WD40,CAF1C_H4-bd | e8idti1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| IA [auth m] | WD40,CAF1C_H4-bd | e8idtm1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| JA [auth n] | WD40,CAF1C_H4-bd | e8idtn1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| KA [auth o] | WD40,CAF1C_H4-bd | e8idto1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| LA [auth p] | WD40,CAF1C_H4-bd | e8idtp1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| MA [auth r] | WD40,CAF1C_H4-bd | e8idtr1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| OA [auth R] | WD40,CAF1C_H4-bd | e8idtR1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| PA [auth J] | WD40,CAF1C_H4-bd | e8idtJ1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| SA [auth y] | WD40,CAF1C_H4-bd | e8idty1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| UA [auth d] | WD40,CAF1C_H4-bd | e8idtd1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| VA [auth j] | WD40,CAF1C_H4-bd | e8idtj1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| WA [auth k] | WD40,CAF1C_H4-bd | e8idtk1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| F [auth B] | WD40,CAF1C_H4-bd | e8idtB1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| XA [auth Y] | WD40,CAF1C_H4-bd | e8idtY1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| HA [auth l] | WD40,CAF1C_H4-bd | e8idtl1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| FA [auth h] | WD40,CAF1C_H4-bd | e8idth1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| EA [auth g] | Cullin_AB | e8idtg1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Cullin_AB | ECOD (develop294) |
| CA [auth c] | WD40,CAF1C_H4-bd | e8idtc1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| BA [auth b] | WD40,CAF1C_H4-bd | e8idtb1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| AA [auth a] | WD40,CAF1C_H4-bd | e8idta1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| Y [auth X] | WD40,CAF1C_H4-bd | e8idtX1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| X [auth W] | WD40,CAF1C_H4-bd | e8idtW1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| U [auth S] | WD40,CAF1C_H4-bd | e8idtS1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
| K [auth G] | WD40,CAF1C_H4-bd | e8idtG1 | A: alpha bundles | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: WD40,CAF1C_H4-bd | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth 6] | PF01912 | eIF-6 family (eIF-6) | eIF-6 family | - | Family |
| E [auth 9] | PF12171 | Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz) | Zinc-finger double-stranded RNA-binding | - | Family |
| H [auth D] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| H [auth D] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| I [auth E] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| I [auth E] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| L [auth H] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| L [auth H] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| L [auth H] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| M [auth I] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| M [auth I] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| M [auth I] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| N [auth K] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| N [auth K] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| O [auth L] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
| O [auth L] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| P [auth M] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| P [auth M] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| Q [auth N] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| Q [auth N] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| R [auth O] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
| S [auth P] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| T [auth Q] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| V [auth U] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| W [auth V] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| PF10169 | LLP homolog (LLPH) | LLP homolog | - | Family | |
| PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family | |
| NA [auth A] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| NA [auth A] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| NA [auth A] | PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
| OA [auth R] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| PA [auth J] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| PA [auth J] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
| PA [auth J] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| TA [auth 4] | PF08155 | NOGCT (NUC087) domain (NOGCT) | NOGCT (NUC087) domain | This C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. | Domain |
| TA [auth 4] | PF06858 | Nucleolar GTP-binding protein 1 (NOG1) (NOG1) | Nucleolar GTP-binding protein 1 (NOG1) | - | Family |
| TA [auth 4] | PF17835 | NOG1 N-terminal helical domain (NOG1_N) | NOG1 N-terminal helical domain | This domain is found at the N-terminus of NOG1 GTPase proteins. | Domain |
| F [auth B] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| XA [auth Y] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| XA [auth Y] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| XA [auth Y] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| C [auth 7] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| Y [auth X] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| X [auth W] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| U [auth S] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| K [auth G] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| K [auth G] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |














