8IA0 | pdb_00008ia0

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DB [auth Lf]SCOP2B SuperfamilyTranslational proteins 8106190 3000811 SCOP2B (2022-06-29)
IB [auth Lk]SCOP2B SuperfamilyRibosomal L38e protein-like 8106202 3002206 SCOP2B (2022-06-29)
EB [auth Lg]SCOP2B SuperfamilyRibosomal protein L34e-like 8106200 3002203 SCOP2B (2022-06-29)
CB [auth Le]SCOP2B SuperfamilyRibosomal protein L32e 8106182 3000982 SCOP2B (2022-06-29)
AB [auth Lc]SCOP2B SuperfamilyL30e-like 8106196 3001739 SCOP2B (2022-06-29)
YA [auth LY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106166 3000334 SCOP2B (2022-06-29)
WA [auth LV]SCOP2B Superfamily50S Ribosomal protein L14-like 8106208 3000433 SCOP2B (2022-06-29)
VA [auth LU]SCOP2B Superfamily60S Ribosomal protein L22e 8106192 3002158 SCOP2B (2022-06-29)
SA [auth LR]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8106186 3000890 SCOP2B (2022-06-29)
OA [auth LN]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8106168 3000210 SCOP2B (2022-06-29)
GA [auth LC]SCOP2B SuperfamilyRibosomal protein L4 8077111 3001146 SCOP2B (2022-06-29)
FA [auth LB]SCOP2B SuperfamilyTranslational proteins 8106162 3000811 SCOP2B (2022-06-29)
P [auth CN]SCOP2B SuperfamilyPentein 8084662 3000640 SCOP2B (2022-06-29)
M [auth CK]SCOP2B Superfamily50S Ribosomal protein L14-like 8053081 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DB [auth Lf]F_UNCLASSIFIEDe8ia0Lf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
I [auth CG]F_UNCLASSIFIEDe8ia0CG2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: F_UNCLASSIFIEDECOD (1.6)
I [auth CG]F_UNCLASSIFIEDe8ia0CG1 A: a+b two layersX: Cystatin-likeH: Pre-PUA domain (From Topology)T: Pre-PUA domainF: F_UNCLASSIFIEDECOD (1.6)
H [auth CF]F_UNCLASSIFIEDe8ia0CF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: F_UNCLASSIFIEDECOD (1.6)
H [auth CF]F_UNCLASSIFIEDe8ia0CF2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: F_UNCLASSIFIEDECOD (1.6)
LB [auth Lq]F_UNCLASSIFIEDe8ia0Lq2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
LB [auth Lq]F_UNCLASSIFIEDe8ia0Lq1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
KB [auth Ll]F_UNCLASSIFIEDe8ia0Ll1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: F_UNCLASSIFIEDECOD (1.6)
JB [auth Lp]F_UNCLASSIFIEDe8ia0Lp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
IB [auth Lk]F_UNCLASSIFIEDe8ia0Lk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: F_UNCLASSIFIEDECOD (1.6)
F [auth CD]F_UNCLASSIFIEDe8ia0CD2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: F_UNCLASSIFIEDECOD (1.6)
F [auth CD]F_UNCLASSIFIEDe8ia0CD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: F_UNCLASSIFIEDECOD (1.6)
HB [auth Lj]F_UNCLASSIFIEDe8ia0Lj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
GB [auth Li]F_UNCLASSIFIEDe8ia0Li1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: F_UNCLASSIFIEDECOD (1.6)
FB [auth Lh]F_UNCLASSIFIEDe8ia0Lh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
EB [auth Lg]F_UNCLASSIFIEDe8ia0Lg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: F_UNCLASSIFIEDECOD (1.6)
CB [auth Le]F_UNCLASSIFIEDe8ia0Le1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: F_UNCLASSIFIEDECOD (1.6)
BB [auth Ld]F_UNCLASSIFIEDe8ia0Ld1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: F_UNCLASSIFIEDECOD (1.6)
AB [auth Lc]F_UNCLASSIFIEDe8ia0Lc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: F_UNCLASSIFIEDECOD (1.6)
ZA [auth LZ]F_UNCLASSIFIEDe8ia0LZ1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
YA [auth LY]F_UNCLASSIFIEDe8ia0LY1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
XA [auth LX]F_UNCLASSIFIEDe8ia0LX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
WA [auth LV]F_UNCLASSIFIEDe8ia0LV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
VA [auth LU]F_UNCLASSIFIEDe8ia0LU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: F_UNCLASSIFIEDECOD (1.6)
UA [auth LT]F_UNCLASSIFIEDe8ia0LT1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
TA [auth LS]F_UNCLASSIFIEDe8ia0LS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
SA [auth LR]F_UNCLASSIFIEDe8ia0LR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
SA [auth LR]F_UNCLASSIFIEDe8ia0LR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
RA [auth LQ]F_UNCLASSIFIEDe8ia0LQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
QA [auth LP]F_UNCLASSIFIEDe8ia0LP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
PA [auth LO]F_UNCLASSIFIEDe8ia0LO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
OA [auth LN]F_UNCLASSIFIEDe8ia0LN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
NA [auth LM]F_UNCLASSIFIEDe8ia0LM1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
MA [auth LL]F_UNCLASSIFIEDe8ia0LL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: F_UNCLASSIFIEDECOD (1.6)
LA [auth LK]F_UNCLASSIFIEDe8ia0LK1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
LA [auth LK]F_UNCLASSIFIEDe8ia0LK2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
KA [auth LH]F_UNCLASSIFIEDe8ia0LH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
JA [auth LG]F_UNCLASSIFIEDe8ia0LG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: F_UNCLASSIFIEDECOD (1.6)
HA [auth LE]F_UNCLASSIFIEDe8ia0LE1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
GA [auth LC]F_UNCLASSIFIEDe8ia0LC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
GA [auth LC]F_UNCLASSIFIEDe8ia0LC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: F_UNCLASSIFIEDECOD (1.6)
FA [auth LB]F_UNCLASSIFIEDe8ia0LB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
EA [auth LA]F_UNCLASSIFIEDe8ia0LA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
EA [auth LA]F_UNCLASSIFIEDe8ia0LA2 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
C [auth CA]F_UNCLASSIFIEDe8ia0CA1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: F_UNCLASSIFIEDECOD (1.6)
X [auth CV]F_UNCLASSIFIEDe8ia0CV1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: F_UNCLASSIFIEDECOD (1.6)
P [auth CN]F_UNCLASSIFIEDe8ia0CN1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: F_UNCLASSIFIEDECOD (1.6)
IA [auth LF]F_UNCLASSIFIEDe8ia0LF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
O [auth CM]F_UNCLASSIFIEDe8ia0CM1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
T [auth CR]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
I [auth CG]PF03657UPF0113 PUA domain (UPF0113)UPF0113 PUA domainDomain
I [auth CG]PF17833NIP7/UPF0113, pre-PUA domain (pre-PUA_NIP7)NIP7/UPF0113, pre-PUA domainThis entry represents the N-terminal, pre-PUA domain of yeast 60S ribosome subunit biogenesis protein NIP7 and homologues, some uncharacterised proteins from the UPF0113 family and similar sequences from eukaryotes and some archaeal species. NIP7 is ...This entry represents the N-terminal, pre-PUA domain of yeast 60S ribosome subunit biogenesis protein NIP7 and homologues, some uncharacterised proteins from the UPF0113 family and similar sequences from eukaryotes and some archaeal species. NIP7 is required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly. This domain is found associated with Pfam:PF03657.
Domain
H [auth CF]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
H [auth CF]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
G [auth CE]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
G [auth CE]PF13959ATP-dependent rRNA helicase SPB4-like, C-terminal extension (CTE_SPB4)ATP-dependent rRNA helicase SPB4-like, C-terminal extensionThis short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual ...This short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual RecA domains (Pfam:PF00270 and Pfam:PF00271), a C-terminal extension (CTE, represented by this entry) and a C-terminal tail (Pfam:PF23681). This domain packs closely onto the catalytic core and engages the four nucleotides immediately 5' to those within the RNA binding pocket. It shows a mainly alpha- helical structure [1].
Domain
G [auth CE]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
F [auth CD]PF08154NLE (NUC135) domain (NLE)NLE (NUC135) domainThis domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1]. Domain
F [auth CD]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
ZA [auth LZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
YA [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
YA [auth LY]PF00467KOW motif (KOW)KOW motif- Family
E [auth CC]PF08145BOP1NT (NUC169) domain (BOP1NT)BOP1NT (NUC169) domainThis N terminal domain is found in BOP1-like WD40 proteins [1]. Domain
E [auth CC]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
XA [auth LX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
XA [auth LX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
WA [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
VA [auth LU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
TA [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
SA [auth LR]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
RA [auth LQ]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
QA [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
PA [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
OA [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
D [auth CB]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
NA [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
MA [auth LL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
LA [auth LK]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
LA [auth LK]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
LA [auth LK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
KA [auth LH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
KA [auth LH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
JA [auth LG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
HA [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
HA [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
GA [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
GA [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
GA [auth LC]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
EA [auth LA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
C [auth CA]PF04427Brix domain (Brix)Brix domainDomain
BA [auth CZ]PF08144CPL (NUC119) domain (CPL)CPL (NUC119) domain- Repeat
AA [auth CY]PF03715Noc2p family (Noc2)Noc2p family- Family
Y [auth CW]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
Y [auth CW]PF13959ATP-dependent rRNA helicase SPB4-like, C-terminal extension (CTE_SPB4)ATP-dependent rRNA helicase SPB4-like, C-terminal extensionThis short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual ...This short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual RecA domains (Pfam:PF00270 and Pfam:PF00271), a C-terminal extension (CTE, represented by this entry) and a C-terminal tail (Pfam:PF23681). This domain packs closely onto the catalytic core and engages the four nucleotides immediately 5' to those within the RNA binding pocket. It shows a mainly alpha- helical structure [1].
Domain
Y [auth CW]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
X [auth CV]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
W [auth CU]PF05890Eukaryotic rRNA processing protein EBP2 (Ebp2)Eukaryotic rRNA processing protein EBP2- Family
V [auth CT]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
V [auth CT]PF07540Nucleolar complex-associated protein (NOC3p)Nucleolar complex-associated protein- Family
U [auth CS]PF11861Ribosomal RNA methyltransferase Spb1, DUF3381 (DUF3381)Ribosomal RNA methyltransferase Spb1, DUF3381This domain is functionally uncharacterised and it is found in the central region of fungal SPB1 and mammalian homologue FTSJ3. This domain is found associated with Pfam:PF07780, Pfam:PF01728. SPB1 is an adoMet-dependent rRNA methyltransferase requir ...This domain is functionally uncharacterised and it is found in the central region of fungal SPB1 and mammalian homologue FTSJ3. This domain is found associated with Pfam:PF07780, Pfam:PF01728. SPB1 is an adoMet-dependent rRNA methyltransferase required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [1]. FTSJ3, SPB1 homologue in humans, is associated with NIP7 (involved in the biogenesis of 40S subunit) and functions in pre-rRNA processing [2].
Domain
U [auth CS]PF01728FtsJ-like methyltransferase (FtsJ)FtsJ-like methyltransferase- Family
S [auth CQ]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
R [auth CP]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/FThis is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) posi ...This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA [1,2].
Domain
R [auth CP]PF22458Methyltr_RsmF/B-like, ferredoxin-like domain (RsmF-B_ferredox)Methyltr_RsmF/B-like, ferredoxin-like domainThis entry represents a ferredoxin-like domain found in methyltransferases RsmB, RsmF and related sequences [1-5]. Domain
P [auth CN]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
IA [auth LF],
O [auth CM]		PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
IA [auth LF],
O [auth CM]		PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
IA [auth LF],
O [auth CM]		PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
N [auth CL]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
N [auth CL]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
M [auth CK]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth CJ]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
L [auth CJ]PF00533BRCA1 C Terminus (BRCT) domain (BRCT)BRCA1 C Terminus (BRCT) domainThe BRCT domain is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage. The BRCT domain of XRCC1 forms a homodimer in the crystal structure. This suggests that pairs of BRCT domains associate as homo- ...The BRCT domain is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage. The BRCT domain of XRCC1 forms a homodimer in the crystal structure. This suggests that pairs of BRCT domains associate as homo- or heterodimers. BRCT domains are often found as tandem-repeat pairs [2]. Structures of the BRCA1 BRCT domains revealed a basis for a widely utilised head-to-tail BRCT-BRCT oligomerisation mode [3]. This conserved tandem BRCT architecture facilitates formation of the canonical BRCT phospho-peptide interaction cleft at a groove between the BRCT domains. Disease associated missense and nonsense mutations in the BRCA1 BRCT domains disrupt peptide binding by directly occluding this peptide binding groove, or by disrupting key conserved BRCT core folding determinants [5].
Domain
K [auth CI]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
J [auth CH]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. Domain
J [auth CH]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
J [auth CH]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
T [auth CR]Nucleolar protein 16-
DB [auth Lf]60S ribosomal protein l33-like protein
I [auth CG]60S ribosome subunit biogenesis protein NIP7
H [auth CF]Ribosome assembly factor mrt4
G [auth CE]RNA helicase
LB [auth Lq]Ribosomal protein
KB [auth Ll]60S ribosomal protein L39
JB [auth Lp]60S ribosomal protein L43-like protein
IB [auth Lk]60S ribosomal protein L38-like protein
F [auth CD]Ribosome biogenesis protein YTM1
HB [auth Lj]Ribosomal protein L37
GB [auth Li]60S ribosomal protein L36
FB [auth Lh]dolichyl-diphosphooligosaccharide--protein glycotransferase
EB [auth Lg]Ribosomal protein l34-like protein
CB [auth Le]60S ribosomal protein L32-like protein
BB [auth Ld]Putative 60S ribosomal protein
AB [auth Lc]60S ribosomal protein l30-like protein -
ZA [auth LZ]60S ribosomal protein L27
YA [auth LY]60S ribosomal protein L26-like protein
E [auth CC]Ribosome biogenesis protein ERB1
XA [auth LX]60S ribosomal protein L25-like protein
WA [auth LV]60S ribosomal protein l23-like protein
VA [auth LU]60S ribosomal protein L22-like protein
UA [auth LT]60S ribosomal protein l21-like protein
TA [auth LS]60S ribosomal protein L20
SA [auth LR]Ribosomal protein L19
RA [auth LQ]Ribosomal protein L18-like protein
QA [auth LP]60S ribosomal protein l17-like protein
PA [auth LO]60S ribosomal protein L16-like protein
OA [auth LN]Ribosomal protein L15
D [auth CB]Ribosome biogenesis protein C8F11.04- - -
NA [auth LM]60S ribosomal protein L14-like protein
MA [auth LL]60S ribosomal protein L13
LA [auth LK]60S ribosomal protein L12-like protein
KA [auth LH]60S ribosomal protein l9-like protein
JA [auth LG]60S ribosomal protein L8
HA [auth LE]60S ribosomal protein L6
GA [auth LC]60S ribosomal protein L4-like protein
FA [auth LB]60S ribosomal protein L3-like protein
EA [auth LA]60S ribosomal protein L2-like protein
DA [auth Cz]rRNA-processing protein-
C [auth CA]Brix domain-containing protein
CA [auth Ca]Nucleolar protein 12 -
BA [auth CZ]PUM-HD domain-containing protein
AA [auth CY]Putative NOC2 family protein-
Z [auth CX]60S ribosomal subunit-like protein
Y [auth CW]ATP-dependent RNA helicase
X [auth CV]Putative 60S ribosomal protein
W [auth CU]rRNA-processing protein EBP2-
V [auth CT]Nucleolar complex-associated protein 3
U [auth CS]AdoMet-dependent rRNA methyltransferase SPB1
B [auth C2]RNA (319-MER)---
S [auth CQ]Ribosome biogenesis protein RLP24
R [auth CP]RNA methyltransferase nop2-like protein
Q [auth CO]DUF2423 domain-containing protein- -
P [auth CN]Eukaryotic translation initiation factor 6
IA [auth LF],
O [auth CM]		60S ribosomal protein l7-like protein
N [auth CL]Putative GTP binding protein
M [auth CK]Ribosome biogenesis protein NSA2 homolog-
L [auth CJ]Pescadillo homolog
K [auth CI]Putative RNA-binding protein -
J [auth CH]Nucleolar GTP-binding protein 1
A [auth C1]RNA (3341-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
T [auth CR]IPR019002Ribosome biogenesis protein Nop16Family
DB [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
DB [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DB [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
DB [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
I [auth CG]IPR015947PUA-like superfamilyHomologous Superfamily
I [auth CG]IPR005155UPF0113, PUA domainDomain
I [auth CG]IPR04059860S ribosome subunit biogenesis protein NIP7, pre-PUA domainDomain
I [auth CG]IPR016686Ribosome biogenesis factor, NIP7Family
I [auth CG]IPR002478PUA domainDomain
I [auth CG]IPR036974PUA domain superfamilyHomologous Superfamily
I [auth CG]IPR05535960S ribosome subunit biogenesis protein Nip7, pre-PUA domain, eukaryotesDomain
H [auth CF]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
H [auth CF]IPR001790Large ribosomal subunit protein uL10Family
H [auth CF]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
H [auth CF]IPR051742Ribosomal Assembly Factor uL10Family
H [auth CF]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
H [auth CF]IPR033867Ribosome assembly factor Mrt4Family
G [auth CE]IPR001650Helicase, C-terminal domain-likeDomain
G [auth CE]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
G [auth CE]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
G [auth CE]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
G [auth CE]IPR014014RNA helicase, DEAD-box type, Q motifDomain
G [auth CE]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
G [auth CE]IPR011545DEAD/DEAH-box helicase domainDomain
G [auth CE]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LB [auth Lq]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
LB [auth Lq]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
LB [auth Lq]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
LB [auth Lq]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
LB [auth Lq]IPR002143Large ribosomal subunit protein uL1Family
LB [auth Lq]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
KB [auth Ll]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
KB [auth Ll]IPR000077Large ribosomal subunit protein eL39Family
JB [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
JB [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JB [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JB [auth Lp]IPR050522Eukaryotic ribosomal protein eL43Family
IB [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
IB [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
F [auth CD]IPR019775WD40 repeat, conserved siteConserved Site
F [auth CD]IPR012972NLEDomain
F [auth CD]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth CD]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
F [auth CD]IPR001680WD40 repeatRepeat
F [auth CD]IPR028599WD repeat WDR12/Ytm1Family
F [auth CD]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HB [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
HB [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
HB [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HB [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GB [auth Li]IPR000509Large ribosomal subunit protein eL36Family
GB [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
FB [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
FB [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
FB [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
FB [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
FB [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
EB [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
EB [auth Lg]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
EB [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
CB [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
CB [auth Le]IPR001515Large ribosomal subunit protein eL32Family
BB [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
BB [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
BB [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
AB [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
AB [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AB [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
AB [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
AB [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
ZA [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
ZA [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
ZA [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
ZA [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
ZA [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
YA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
YA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
YA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
YA [auth LY]IPR005824KOWDomain
YA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth CC]IPR001680WD40 repeatRepeat
E [auth CC]IPR019775WD40 repeat, conserved siteConserved Site
E [auth CC]IPR012953BOP1, N-terminal domainDomain
E [auth CC]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth CC]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth CC]IPR028598WD repeat BOP1/Erb1Family
XA [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
XA [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
XA [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
XA [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
WA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
WA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
WA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
VA [auth LU]IPR002671Large ribosomal subunit protein eL22Family
VA [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
UA [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
UA [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
UA [auth LT]IPR001147Large ribosomal subunit protein eL21Family
UA [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
TA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
TA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
SA [auth LR]IPR056809GCN1-like, HEAT repeatsDomain
SA [auth LR]IPR016024Armadillo-type foldHomologous Superfamily
SA [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
SA [auth LR]IPR057546Stalled ribosome sensor GCN1-like, HEAT repeats regionDomain
SA [auth LR]IPR057260Ribosomal protein L19e, C-terminal domainDomain
SA [auth LR]IPR004155PBS lyase HEAT-like repeatRepeat
SA [auth LR]IPR034085TOG domainDomain
SA [auth LR]IPR019399Parkin co-regulated proteinFamily
SA [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
SA [auth LR]IPR021133HEAT, type 2Repeat
SA [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
SA [auth LR]IPR057259Ribosomal protein L19e, N-terminal domainDomain
SA [auth LR]IPR011989Armadillo-like helicalHomologous Superfamily
SA [auth LR]IPR022716Gcn1, N-terminalDomain
SA [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
SA [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
SA [auth LR]IPR056810Stalled ribosome sensor GCN1-like, N-terminalDomain
RA [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
RA [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
RA [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
RA [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
QA [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
QA [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
QA [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
QA [auth LP]IPR001063Large ribosomal subunit protein uL22Family
PA [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
PA [auth LO]IPR005822Large ribosomal subunit protein uL13Family
PA [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
PA [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
OA [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
OA [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
OA [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
OA [auth LN]IPR000439Large ribosomal subunit protein eL15Family
D [auth CB]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
D [auth CB]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
D [auth CB]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
NA [auth LM]IPR039660Large ribosomal subunit protein eL14Family
NA [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
NA [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth LL]IPR001380Large ribosomal subunit protein eL13Family
MA [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
LA [auth LK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
LA [auth LK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
LA [auth LK]IPR000911Ribosomal protein uL11Family
LA [auth LK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
LA [auth LK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
LA [auth LK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
KA [auth LH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
KA [auth LH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
KA [auth LH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
KA [auth LH]IPR000702Large ribosomal subunit protein uL6-likeFamily
JA [auth LG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
JA [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
JA [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
JA [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
JA [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
JA [auth LG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
HA [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
HA [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
HA [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth LE]IPR000915Large ribosomal subunit protein eL6Family
GA [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
GA [auth LC]IPR002136Large ribosomal subunit protein uL4Family
GA [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
GA [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
GA [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
FA [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
FA [auth LB]IPR000597Large ribosomal subunit protein uL3Family
FA [auth LB]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
EA [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
EA [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
EA [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
EA [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
EA [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EA [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
EA [auth LA]IPR002171Large ribosomal subunit protein uL2Family
DA [auth Cz]IPR005579Cgr1-likeFamily
C [auth CA]IPR026532Ribosome biogenesis protein BRX1Family
C [auth CA]IPR007109Brix domainDomain
CA [auth Ca]IPR019186Nucleolar protein 12Family
BA [auth CZ]IPR012959CPL domainDomain
BA [auth CZ]IPR011989Armadillo-like helicalHomologous Superfamily
BA [auth CZ]IPR016024Armadillo-type foldHomologous Superfamily
BA [auth CZ]IPR001313Pumilio RNA-binding repeatRepeat
BA [auth CZ]IPR033133Pumilio homology domainDomain
BA [auth CZ]IPR040059Pumilio homologue 3Family
AA [auth CY]IPR005343Nucleolar complex protein 2Family
Z [auth CX]IPR03765060S ribosomal subunit assembly/export protein Loc1Family
Y [auth CW]IPR001650Helicase, C-terminal domain-likeDomain
Y [auth CW]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
Y [auth CW]IPR056330ATP-dependent rRNA helicase SPB4-like, C-terminal tailDomain
Y [auth CW]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
Y [auth CW]IPR014014RNA helicase, DEAD-box type, Q motifDomain
Y [auth CW]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
Y [auth CW]IPR011545DEAD/DEAH-box helicase domainDomain
Y [auth CW]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
X [auth CV]IPR029004Ribosomal eL28/Mak16Domain
X [auth CV]IPR002672Large ribosomal subunit protein eL28Family
W [auth CU]IPR008610Eukaryotic rRNA processingFamily
V [auth CT]IPR016903Nucleolar complex-associated protein 3Family
V [auth CT]IPR011501Nucleolar complex-associated protein 3, N-terminalDomain
V [auth CT]IPR005612CCAAT-binding factorDomain
U [auth CS]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
U [auth CS]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
U [auth CS]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
U [auth CS]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
U [auth CS]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
U [auth CS]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
U [auth CS]IPR050082Ribosomal RNA large subunit methyltransferase RlmEFamily
S [auth CQ]IPR011017TRASH domainDomain
S [auth CQ]IPR056366Large ribosomal subunit protein eL24Family
S [auth CQ]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
S [auth CQ]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
R [auth CP]IPR054728Ribosomal RNA small subunit methyltransferase B-like, ferredoxin-like domainDomain
R [auth CP]IPR018314RsmB/NOL1/NOP2-like, conserved siteConserved Site
R [auth CP]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
R [auth CP]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
R [auth CP]IPR023267RNA (C5-cytosine) methyltransferaseFamily
R [auth CP]IPR011023Nop2pDomain
R [auth CP]IPR023273RNA (C5-cytosine) methyltransferase, NOP2Family
R [auth CP]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
Q [auth CO]IPR019434Domain of unknown function DUF2423Domain
P [auth CN]IPR002769Translation initiation factor IF6Family
IA [auth LF],
O [auth CM]		IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IA [auth LF],
O [auth CM]		IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
IA [auth LF],
O [auth CM]		IPR039699Large ribosomal subunit protein uL30Family
IA [auth LF],
O [auth CM]		IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
IA [auth LF],
O [auth CM]		IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
IA [auth LF],
O [auth CM]		IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
N [auth CL]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
N [auth CL]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
N [auth CL]IPR006073GTP binding domainDomain
N [auth CL]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
N [auth CL]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
N [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
M [auth CK]IPR039411Ribosomal biogenesis NSA2 familyFamily
M [auth CK]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
L [auth CJ]IPR001357BRCT domainDomain
L [auth CJ]IPR010613PescadilloFamily
L [auth CJ]IPR036420BRCT domain superfamilyHomologous Superfamily
K [auth CI]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
K [auth CI]IPR000504RNA recognition motif domainDomain
K [auth CI]IPR035979RNA-binding domain superfamilyHomologous Superfamily
J [auth CH]IPR024926Nucleolar GTP-binding protein 1Family
J [auth CH]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
J [auth CH]IPR012973NOG, C-terminalDomain
J [auth CH]IPR041623NOG1, N-terminal helical domainDomain
J [auth CH]IPR006073GTP binding domainDomain
J [auth CH]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
J [auth CH]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E [auth CC]SEP Parent Component: SER

RESID:  AA0037

PSI-MOD :  O-phospho-L-serine MOD:00046
E [auth CC]TPO Parent Component: THR

RESID:  AA0037 , AA0038

PSI-MOD :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047