8I9R | pdb_00008i9r

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
UA [auth LD]SCOP2B SuperfamilyTranslational machinery components 8106194 3000571 SCOP2B (2022-06-29)
TA [auth LJ]SCOP2B SuperfamilyRL5-like 8077505 3001709 SCOP2B (2022-06-29)
FA [auth Lf]SCOP2B SuperfamilyTranslational proteins 8106190 3000811 SCOP2B (2022-06-29)
EA [auth Le]SCOP2B SuperfamilyRibosomal protein L32e 8106182 3000982 SCOP2B (2022-06-29)
DA [auth LY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8106166 3000334 SCOP2B (2022-06-29)
CA [auth LV]SCOP2B Superfamily50S Ribosomal protein L14-like 8106208 3000433 SCOP2B (2022-06-29)
W [auth LN]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8106168 3000210 SCOP2B (2022-06-29)
Q [auth LC]SCOP2B SuperfamilyRibosomal protein L4 8077111 3001146 SCOP2B (2022-06-29)
P [auth LB]SCOP2B SuperfamilyTranslational proteins 8106162 3000811 SCOP2B (2022-06-29)
K [auth CN]SCOP2B SuperfamilyPentein 8084662 3000640 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth LQ]F_UNCLASSIFIEDe8i9rLQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
HA [auth Li]F_UNCLASSIFIEDe8i9rLi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: F_UNCLASSIFIEDECOD (1.6)
IA [auth Lj]F_UNCLASSIFIEDe8i9rLj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
PA [auth CP]F_UNCLASSIFIEDe8i9rCP2 A: a+b two layersX: Alpha-beta plaitsH: NOL1/NOP2/sun N-terminal ferredoxin-like domain (From Topology)T: NOL1/NOP2/sun N-terminal ferredoxin-like domainF: F_UNCLASSIFIEDECOD (1.6)
PA [auth CP]F_UNCLASSIFIEDe8i9rCP1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: F_UNCLASSIFIEDECOD (1.6)
UA [auth LD]F_UNCLASSIFIEDe8i9rLD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: F_UNCLASSIFIEDECOD (1.6)
TA [auth LJ]F_UNCLASSIFIEDe8i9rLJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: F_UNCLASSIFIEDECOD (1.6)
SA [auth Cx]F_UNCLASSIFIEDe8i9rCx1 A: a+b two layersX: Rrs1 (From Topology)H: Rrs1 (From Topology)T: Rrs1F: F_UNCLASSIFIEDECOD (1.6)
RA [auth Lq]F_UNCLASSIFIEDe8i9rLq2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
RA [auth Lq]F_UNCLASSIFIEDe8i9rLq1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
QA [auth CG]F_UNCLASSIFIEDe8i9rCG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: F_UNCLASSIFIEDECOD (1.6)
QA [auth CG]F_UNCLASSIFIEDe8i9rCG2 A: a+b two layersX: Cystatin-likeH: Pre-PUA domain (From Topology)T: Pre-PUA domainF: F_UNCLASSIFIEDECOD (1.6)
OA [auth Cg]F_UNCLASSIFIEDe8i9rCg1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: F_UNCLASSIFIEDECOD (1.6)
NA [auth Cy]F_UNCLASSIFIEDe8i9rCy1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: F_UNCLASSIFIEDECOD (1.6)
JA [auth Cc]F_UNCLASSIFIEDe8i9rCc1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
GA [auth Lh]F_UNCLASSIFIEDe8i9rLh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: F_UNCLASSIFIEDECOD (1.6)
FA [auth Lf]F_UNCLASSIFIEDe8i9rLf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
EA [auth Le]F_UNCLASSIFIEDe8i9rLe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: F_UNCLASSIFIEDECOD (1.6)
DA [auth LY]F_UNCLASSIFIEDe8i9rLY1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
CA [auth LV]F_UNCLASSIFIEDe8i9rLV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: F_UNCLASSIFIEDECOD (1.6)
BA [auth LT]F_UNCLASSIFIEDe8i9rLT1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
AA [auth LS]F_UNCLASSIFIEDe8i9rLS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
Y [auth LP]F_UNCLASSIFIEDe8i9rLP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: F_UNCLASSIFIEDECOD (1.6)
X [auth LO]F_UNCLASSIFIEDe8i9rLO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)
W [auth LN]F_UNCLASSIFIEDe8i9rLN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
V [auth LM]F_UNCLASSIFIEDe8i9rLM1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
U [auth LL]F_UNCLASSIFIEDe8i9rLL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: F_UNCLASSIFIEDECOD (1.6)
T [auth LG]F_UNCLASSIFIEDe8i9rLG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: F_UNCLASSIFIEDECOD (1.6)
R [auth LE]F_UNCLASSIFIEDe8i9rLE1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
Q [auth LC]F_UNCLASSIFIEDe8i9rLC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
Q [auth LC]F_UNCLASSIFIEDe8i9rLC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: F_UNCLASSIFIEDECOD (1.6)
P [auth LB]F_UNCLASSIFIEDe8i9rLB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
K [auth CN]F_UNCLASSIFIEDe8i9rCN1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: F_UNCLASSIFIEDECOD (1.6)
J [auth CM]F_UNCLASSIFIEDe8i9rCM1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
S [auth LF]F_UNCLASSIFIEDe8i9rLF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Z [auth LQ]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
PA [auth CP]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/FThis is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) posi ...This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA [1,2].
Domain
PA [auth CP]PF22458Methyltr_RsmF/B-like, ferredoxin-like domain (RsmF-B_ferredox)Methyltr_RsmF/B-like, ferredoxin-like domainThis entry represents a ferredoxin-like domain found in methyltransferases RsmB, RsmF and related sequences [1-5]. Domain
I [auth CJ]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
I [auth CJ]PF00533BRCA1 C Terminus (BRCT) domain (BRCT)BRCA1 C Terminus (BRCT) domainThe BRCT domain is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage. The BRCT domain of XRCC1 forms a homodimer in the crystal structure. This suggests that pairs of BRCT domains associate as homo- ...The BRCT domain is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage. The BRCT domain of XRCC1 forms a homodimer in the crystal structure. This suggests that pairs of BRCT domains associate as homo- or heterodimers. BRCT domains are often found as tandem-repeat pairs [2]. Structures of the BRCA1 BRCT domains revealed a basis for a widely utilised head-to-tail BRCT-BRCT oligomerisation mode [3]. This conserved tandem BRCT architecture facilitates formation of the canonical BRCT phospho-peptide interaction cleft at a groove between the BRCT domains. Disease associated missense and nonsense mutations in the BRCA1 BRCT domains disrupt peptide binding by directly occluding this peptide binding groove, or by disrupting key conserved BRCT core folding determinants [5].
Domain
H [auth CI]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
G [auth CH]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1]. Domain
F [auth CE]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
F [auth CE]PF13959ATP-dependent rRNA helicase SPB4-like, C-terminal extension (CTE_SPB4)ATP-dependent rRNA helicase SPB4-like, C-terminal extensionThis short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual ...This short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual RecA domains (Pfam:PF00270 and Pfam:PF00271), a C-terminal extension (CTE, represented by this entry) and a C-terminal tail (Pfam:PF23681). This domain packs closely onto the catalytic core and engages the four nucleotides immediately 5' to those within the RNA binding pocket. It shows a mainly alpha- helical structure [1].
Domain
F [auth CE]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
F [auth CE]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
F [auth CE]PF04874Mak16 protein C-terminal region (Mak16)Mak16 protein C-terminal region- Family
E [auth CC]PF08145BOP1NT (NUC169) domain (BOP1NT)BOP1NT (NUC169) domainThis N terminal domain is found in BOP1-like WD40 proteins [1]. Domain
E [auth CC]PF05997Nucleolar protein,Nop52 (Nop52)Nucleolar protein,Nop52- Family
WA [auth CX]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
UA [auth LD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
UA [auth LD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
TA [auth LJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
TA [auth LJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
QA [auth CG]PF03657UPF0113 PUA domain (UPF0113)UPF0113 PUA domainDomain
QA [auth CG]PF04427Brix domain (Brix)Brix domainDomain
QA [auth CG]PF17833NIP7/UPF0113, pre-PUA domain (pre-PUA_NIP7)NIP7/UPF0113, pre-PUA domainThis entry represents the N-terminal, pre-PUA domain of yeast 60S ribosome subunit biogenesis protein NIP7 and homologues, some uncharacterised proteins from the UPF0113 family and similar sequences from eukaryotes and some archaeal species. NIP7 is ...This entry represents the N-terminal, pre-PUA domain of yeast 60S ribosome subunit biogenesis protein NIP7 and homologues, some uncharacterised proteins from the UPF0113 family and similar sequences from eukaryotes and some archaeal species. NIP7 is required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly. This domain is found associated with Pfam:PF03657.
Domain
D [auth CB]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
C [auth CA]PF04427Brix domain (Brix)Brix domainDomain
DA [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
DA [auth LY]PF00467KOW motif (KOW)KOW motif- Family
CA [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
AA [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
Y [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
X [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
W [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
V [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
T [auth LG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
R [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
R [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
Q [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
Q [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
N [auth CU]PF05890Eukaryotic rRNA processing protein EBP2 (Ebp2)Eukaryotic rRNA processing protein EBP2- Family
M [auth CR]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
L [auth CQ]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
K [auth CN]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
J [auth CM],
S [auth LF]		PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
J [auth CM],
S [auth LF]		PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
J [auth CM],
S [auth LF]		PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Z [auth LQ]Ribosomal protein L18-like protein
HA [auth Li]60S ribosomal protein L36
IA [auth Lj]Ribosomal protein L37
PA [auth CP]RNA methyltransferase nop2-like protein
I [auth CJ]Pescadillo homolog
H [auth CI]Putative RNA-binding protein -
G [auth CH]Nucleolar GTP-binding protein 1
F [auth CE]RNA helicase
E [auth CC]Ribosome biogenesis protein ERB1
WA [auth CX]60S ribosomal subunit-like protein
VA [auth C4]RNA (119-MER)---
UA [auth LD]60S ribosomal protein l5-like protein
TA [auth LJ]Putative ribosomal protein
SA [auth Cx]Ribosome biogenesis regulatory protein-
RA [auth Lq]Ribosomal protein
QA [auth CG]60S ribosome subunit biogenesis protein NIP7
OA [auth Cg]Brix domain-containing protein
D [auth CB]Ribosome biogenesis protein C8F11.04- - -
NA [auth Cy]Ribosome production factor 2 homolog
MA [auth Cf]60S ribosome biogenesis protein Rrp14
LA [auth Ce]Protein MAK16-
KA [auth Cd]Brix domain-containing protein
JA [auth Cc]Ribosomal RNA-processing protein 1-
GA [auth Lh]dolichyl-diphosphooligosaccharide--protein glycotransferase
FA [auth Lf]60S ribosomal protein l33-like protein
EA [auth Le]60S ribosomal protein L32-like protein
C [auth CA]Brix domain-containing protein
DA [auth LY]60S ribosomal protein L26-like protein
CA [auth LV]60S ribosomal protein l23-like protein
BA [auth LT]60S ribosomal protein l21-like protein
AA [auth LS]60S ribosomal protein L20
Y [auth LP]60S ribosomal protein l17-like protein
X [auth LO]60S ribosomal protein L16-like protein
W [auth LN]Ribosomal protein L15
V [auth LM]60S ribosomal protein L14-like protein
U [auth LL]60S ribosomal protein L13
B [auth C2]RNA (256-MER)---
T [auth LG]60S ribosomal protein L8
R [auth LE]60S ribosomal protein L6
Q [auth LC]60S ribosomal protein L4-like protein
P [auth LB]60S ribosomal protein L3-like protein
O [auth Ch]Ribosomal RNA-processing protein 15-
N [auth CU]rRNA-processing protein EBP2-
M [auth CR]Nucleolar protein 16-
L [auth CQ]Ribosome biogenesis protein RLP24
K [auth CN]Eukaryotic translation initiation factor 6
J [auth CM],
S [auth LF]		60S ribosomal protein l7-like protein
A [auth C1]RNA (3341-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Z [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Z [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
Z [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
Z [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
HA [auth Li]IPR000509Large ribosomal subunit protein eL36Family
HA [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
IA [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
IA [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
PA [auth CP]IPR054728Ribosomal RNA small subunit methyltransferase B-like, ferredoxin-like domainDomain
PA [auth CP]IPR018314RsmB/NOL1/NOP2-like, conserved siteConserved Site
PA [auth CP]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
PA [auth CP]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
PA [auth CP]IPR023267RNA (C5-cytosine) methyltransferaseFamily
PA [auth CP]IPR011023Nop2pDomain
PA [auth CP]IPR023273RNA (C5-cytosine) methyltransferase, NOP2Family
PA [auth CP]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
I [auth CJ]IPR001357BRCT domainDomain
I [auth CJ]IPR010613PescadilloFamily
I [auth CJ]IPR036420BRCT domain superfamilyHomologous Superfamily
H [auth CI]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
H [auth CI]IPR000504RNA recognition motif domainDomain
H [auth CI]IPR035979RNA-binding domain superfamilyHomologous Superfamily
G [auth CH]IPR024926Nucleolar GTP-binding protein 1Family
G [auth CH]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
G [auth CH]IPR012973NOG, C-terminalDomain
G [auth CH]IPR041623NOG1, N-terminal helical domainDomain
G [auth CH]IPR006073GTP binding domainDomain
G [auth CH]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
G [auth CH]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth CE]IPR001650Helicase, C-terminal domain-likeDomain
F [auth CE]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
F [auth CE]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
F [auth CE]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
F [auth CE]IPR014014RNA helicase, DEAD-box type, Q motifDomain
F [auth CE]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
F [auth CE]IPR011545DEAD/DEAH-box helicase domainDomain
F [auth CE]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth CC]IPR001680WD40 repeatRepeat
E [auth CC]IPR019775WD40 repeat, conserved siteConserved Site
E [auth CC]IPR012953BOP1, N-terminal domainDomain
E [auth CC]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth CC]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth CC]IPR028598WD repeat BOP1/Erb1Family
WA [auth CX]IPR03765060S ribosomal subunit assembly/export protein Loc1Family
UA [auth LD]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
UA [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
TA [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
TA [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
TA [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
TA [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
TA [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
SA [auth Cx]IPR007023Ribosomal biogenesis regulatory proteinFamily
RA [auth Lq]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
RA [auth Lq]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
RA [auth Lq]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
RA [auth Lq]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
RA [auth Lq]IPR002143Large ribosomal subunit protein uL1Family
RA [auth Lq]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
QA [auth CG]IPR015947PUA-like superfamilyHomologous Superfamily
QA [auth CG]IPR005155UPF0113, PUA domainDomain
QA [auth CG]IPR04059860S ribosome subunit biogenesis protein NIP7, pre-PUA domainDomain
QA [auth CG]IPR016686Ribosome biogenesis factor, NIP7Family
QA [auth CG]IPR002478PUA domainDomain
QA [auth CG]IPR036974PUA domain superfamilyHomologous Superfamily
QA [auth CG]IPR05535960S ribosome subunit biogenesis protein Nip7, pre-PUA domain, eukaryotesDomain
OA [auth Cg]IPR007109Brix domainDomain
OA [auth Cg]IPR045112Protein Peter Pan-likeFamily
D [auth CB]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
D [auth CB]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
D [auth CB]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
NA [auth Cy]IPR039770Ribosome biogenesis protein Rpf2Family
NA [auth Cy]IPR007109Brix domainDomain
MA [auth Cf]IPR029190Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domainDomain
MA [auth Cf]IPR029188Ribosomal RNA-processing protein 14, N-terminalDomain
MA [auth Cf]IPR007019Surfeit locus 6Family
LA [auth Ce]IPR006958Mak16 proteinFamily
LA [auth Ce]IPR029004Ribosomal eL28/Mak16Domain
KA [auth Cd]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
KA [auth Cd]IPR007109Brix domainDomain
JA [auth Cc]IPR010301Ribosomal RNA processing protein 1Family
GA [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
GA [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
GA [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
GA [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
GA [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
FA [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
FA [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
FA [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
EA [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
EA [auth Le]IPR001515Large ribosomal subunit protein eL32Family
C [auth CA]IPR026532Ribosome biogenesis protein BRX1Family
C [auth CA]IPR007109Brix domainDomain
DA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
DA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
DA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
DA [auth LY]IPR005824KOWDomain
DA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
CA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
CA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
BA [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
BA [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
BA [auth LT]IPR001147Large ribosomal subunit protein eL21Family
BA [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
AA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
AA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
Y [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Y [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
Y [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth LP]IPR001063Large ribosomal subunit protein uL22Family
X [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
X [auth LO]IPR005822Large ribosomal subunit protein uL13Family
X [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
X [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
W [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
W [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
W [auth LN]IPR000439Large ribosomal subunit protein eL15Family
V [auth LM]IPR039660Large ribosomal subunit protein eL14Family
V [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
V [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth LL]IPR001380Large ribosomal subunit protein eL13Family
U [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
T [auth LG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
T [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
T [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
T [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
T [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
T [auth LG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
R [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
R [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
R [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth LE]IPR000915Large ribosomal subunit protein eL6Family
Q [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
Q [auth LC]IPR002136Large ribosomal subunit protein uL4Family
Q [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
Q [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
Q [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
P [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
P [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
P [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
P [auth LB]IPR000597Large ribosomal subunit protein uL3Family
P [auth LB]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
O [auth Ch]IPR012459Ribosomal RNA-processing protein 15Family
N [auth CU]IPR008610Eukaryotic rRNA processingFamily
M [auth CR]IPR019002Ribosome biogenesis protein Nop16Family
L [auth CQ]IPR011017TRASH domainDomain
L [auth CQ]IPR056366Large ribosomal subunit protein eL24Family
L [auth CQ]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
L [auth CQ]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
K [auth CN]IPR002769Translation initiation factor IF6Family
J [auth CM],
S [auth LF]		IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
J [auth CM],
S [auth LF]		IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
J [auth CM],
S [auth LF]		IPR039699Large ribosomal subunit protein uL30Family
J [auth CM],
S [auth LF]		IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
J [auth CM],
S [auth LF]		IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
J [auth CM],
S [auth LF]		IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain