8I8B | pdb_00008i8b

Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
N [auth J]	PF05152	Protein of unknown function (DUF705) (DUF705)	Protein of unknown function (DUF705)	-	Family
I [auth E]	PF04913	Baculovirus Y142 protein (Baculo_Y142)	Baculovirus Y142 protein	-	Family
H [auth D]	PF05054	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein (AcMNPV_Ac109)	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
N [auth J]	38K	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component host cell cytoplasm
L [auth H], M [auth I]	Occlusion-derived virus envelope/capsid protein	-	symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host cell cycle progression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	virion component viral membrane viral envelope cellular anatomical structure membrane virion membrane
J [auth F], K [auth G]	P40	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle virion component
I [auth E]	Early 49 Daa protein	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral nucleocapsid viral capsid virion component host cell cytoplasm
H [auth D]	AcOrf-109 peptide	-	virion assembly viral process viral capsid assembly viral life cycle nuclear capsid assembly biological process involved in interspecies interaction between organisms intracellular transport of virus transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm
E [auth A], F [auth B], G [auth C]	Viral capsid associated protein	DNA binding binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity	exit of virus from host cell nucleus by nuclear egress exit from host cell biological process involved in interspecies interaction between organisms viral process exit of virus from host cell nucleus biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth W], B [auth X], C [auth Y], D [auth Z]	Major viral capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host cell nuclear matrix host intracellular part host cell nucleus other organism part host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
N [auth J]	IPR007827	Protein of unknown function DUF694	Family
N [auth J]	IPR036412	HAD-like superfamily	Homologous Superfamily
N [auth J]	IPR023214	HAD superfamily	Homologous Superfamily
N [auth J]	IPR010033	HAD-superfamily phosphatase, subfamily IIIC	Domain
L [auth H], M [auth I]	IPR007978	Baculovirus occlusion-derived virus envelope EC27	Family
J [auth F], K [auth G]	IPR008562	Autographa californica nuclear polyhedrosis virus (AcMNPV), C42	Family
I [auth E]	IPR006997	Baculovirus Y142 protein	Family
H [auth D]	IPR007748	Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf109	Family
E [auth A], F [auth B], G [auth C]	IPR009893	Nucleopolyhedrovirus capsid P80/P87	Family
A [auth W], B [auth X], C [auth Y], D [auth Z]	IPR007589	Baculovirus major capsid protein VP39	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.