8HMD | pdb_00008hmd

base module state 2 of Tetrahymena IFT-A

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth F]PF15305Intraflagellar transport protein 43 (IFT43)Intraflagellar transport protein 43- Family
PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
PF25058Tetratricopeptide repeat protein 21 ARM repeat (ARM_TT21)Tetratricopeptide repeat protein 21 ARM repeat- Repeat
PF25068Tetratricopeptide repeat protein 21 forth ARM domain (ARM_TT21_4th)Tetratricopeptide repeat protein 21 forth ARM domain- Repeat
PF25064TT21 fifth ARM repeats domain (ARM_TT21_5th)TT21 fifth ARM repeats domain- Repeat
PF25063Tetratricopeptide repeat protein 21 C-terminal ARM domain (ARM_TT21_C)Tetratricopeptide repeat protein 21 C-terminal ARM domain- Repeat
PF25062Tetratricopeptide repeat protein 21 N-terminal ARM repeat (ARM_TT21_N)Tetratricopeptide repeat protein 21 N-terminal ARM repeat- Repeat
PF25060Tetratricopeptide repeat protein 21 second ARM domain (ARM_TT21_2nd)Tetratricopeptide repeat protein 21 second ARM domain- Repeat
PF24797WDR35/TULP4 N-terminal (Beta-prop_WDR35_TULP_N)WDR35/TULP4 N-terminal- Repeat
PF23387IFT80/172/WDR35/WDR19 TPR domain (TPR_IFT80_172)IFT80/172/WDR35/WDR19 TPR domain- Repeat
PF23145IFT121, second zinc finger domain (Zf_2nd_IFT121)IFT121, second zinc finger domainThis domain is found C-terminal in the homologues of Intraflagellar transport protein 121 (IFT121). IFT121 is a component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled rece ...This domain is found C-terminal in the homologues of Intraflagellar transport protein 121 (IFT121). IFT121 is a component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors. This protein plays a role in cilia assembly and maintenance [1-3]. IFT121 is predicted to contain a tandem of zinc fingers with rubredoxin-like fold. This entry represents the second rubredoxin-like zinc finger.
Domain
PF23390WDR35 second beta-propeller (Beta-prop_WDR35_2nd)WDR35 second beta-propeller- Repeat
PF25170WD repeat-containing protein 35, TPR repeats (TPR_WDR35)WD repeat-containing protein 35, TPR repeats- Repeat
PF25768IFT121-like, TPR repeats (TPR_IFT121)IFT121-like, TPR repeats- Repeat
PF23377IFT122 second beta-propeller (Beta-prop_IFT122_2nd)IFT122 second beta-propeller- Repeat
PF25295IFT122, TPR domain (TPR_IFT122)IFT122, TPR domain- Repeat
PF23381IFT122 first beta-propeller (Beta-prop_IFT122_1st)IFT122 first beta-propeller- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth F]Intraflagellar transport protein 43 homolog-
Tetratricopeptide repeat protein-
WD40 repeat protein-
Intraflagellar transport protein 122 homolog-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth F]IPR029302Intraflagellar transport protein 43Family
IPR056832Tetratricopeptide repeat protein 21A/21B, second ARM domainDomain
IPR056834Tetratricopeptide repeat protein 21A/21B, C-terminal ARM domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR056833Tetratricopeptide repeat protein 21A/21B, N-terminal ARM repeatDomain
IPR019734Tetratricopeptide repeatRepeat
IPR056836Tetratricopeptide repeat protein 21A/21B, fourth ARM domainDomain
IPR056835Tetratricopeptide repeat protein 21A/21B, fifth ARM repeats domainDomain
IPR040364Tetratricopeptide repeat protein 21A/21BFamily
IPR017233WD repeat protein 35Family
IPR056158IFT121, second beta-propeller domainDomain
IPR057361WD repeat-containing protein 35, TPR repeatsRepeat
IPR039857Intraflagellar transport protein 122/121 homologFamily
IPR056157IFT80/172/WDR35, TPR domainDomain
IPR056170IFT121-like, zinc finger domainDomain
IPR056159IFT121/TULP4, N-terminalDomain
IPR057979IFT121-like, TPR repeatsDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR056153IFT122/SMU1, beta-propeller domainDomain
IPR039857Intraflagellar transport protein 122/121 homologFamily
IPR056152IFT122, second beta-propeller domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR057411Intraflagellar transport protein 122 homolog, TPR domainDomain