8HMD | pdb_00008hmd

base module state 2 of Tetrahymena IFT-A

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth F]	PF15305	Intraflagellar transport protein 43 (IFT43)	Intraflagellar transport protein 43	-	Family
C	PF14559	Tetratricopeptide repeat (TPR_19)	Tetratricopeptide repeat	-	Repeat
C	PF13181	Tetratricopeptide repeat (TPR_8)	Tetratricopeptide repeat	-	Repeat
C	PF13432	Tetratricopeptide repeat (TPR_16)	Tetratricopeptide repeat	-	Repeat
A	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth F]	Intraflagellar transport protein 43 homolog	-	cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport intraciliary retrograde transport establishment of localization cellular component organization localization organelle organization establishment of localization in cell microtubule-based transport cellular process transport along microtubule cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport intraciliary retrograde transport establishment of localization cellular component organization localization organelle organization establishment of localization in cell microtubule-based transport cellular process transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cellular component organization or biogenesis cilium organization intraciliary transport	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection protein-containing complex intraciliary transport particle intraciliary transport particle A
C	Tetratricopeptide repeat protein	-	localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport intraciliary retrograde transport establishment of localization cellular component organization organelle organization localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport intraciliary retrograde transport establishment of localization cellular component organization organelle organization establishment of localization in cell microtubule-based transport cellular process transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cellular component organization or biogenesis cilium organization intraciliary transport	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection protein-containing complex intraciliary transport particle intraciliary transport particle A
B	WD40 repeat protein	-	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis non-motile cilium assembly cilium organization cell projection assembly organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis non-motile cilium assembly cilium organization cell projection assembly localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization cellular localization transport intracellular transport intraciliary retrograde transport establishment of localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process intraciliary transport	protein-containing complex intraciliary transport particle intraciliary transport particle A intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle non-motile cilium cell projection protein-containing complex intraciliary transport particle intraciliary transport particle A intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle non-motile cilium cell projection cilium plasma membrane bounded cell projection
A	Intraflagellar transport protein 122 homolog	-	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis non-motile cilium assembly cilium organization cell projection assembly organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis non-motile cilium assembly cilium organization cell projection assembly localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization cellular localization transport intracellular transport intraciliary retrograde transport establishment of localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process intraciliary transport	protein-containing complex intraciliary transport particle intraciliary transport particle A membrane-bounded organelle non-motile cilium cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth F]	IPR029302	Intraflagellar transport protein 43	Family
C	IPR056832	Tetratricopeptide repeat protein 21A/21B, second ARM domain	Domain
C	IPR056834	Tetratricopeptide repeat protein 21A/21B, C-terminal ARM domain	Domain
C	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
C	IPR056833	Tetratricopeptide repeat protein 21A/21B, N-terminal ARM repeat	Domain
C	IPR019734	Tetratricopeptide repeat	Repeat
C	IPR056836	Tetratricopeptide repeat protein 21A/21B, fourth ARM domain	Domain
C	IPR056835	Tetratricopeptide repeat protein 21A/21B, fifth ARM repeats domain	Domain
C	IPR040364	Tetratricopeptide repeat protein 21A/21B	Family
B	IPR017233	WD repeat protein 35	Family
B	IPR056158	IFT121, second beta-propeller domain	Domain
B	IPR057361	WD repeat-containing protein 35, TPR repeats	Repeat
B	IPR039857	Intraflagellar transport protein 122/121 homolog	Family
B	IPR056157	IFT80/172/WDR35, TPR domain	Domain
B	IPR056170	IFT121-like, zinc finger domain	Domain
B	IPR056159	IFT121/TULP4, N-terminal	Domain
B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
B	IPR001680	WD40 repeat	Repeat
B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A	IPR001680	WD40 repeat	Repeat
A	IPR039857	Intraflagellar transport protein 122/121 homolog	Family
A	IPR056153	IFT122, first beta-propeller domain	Domain
A	IPR056152	IFT122, second beta-propeller domain	Domain
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A	IPR057411	Intraflagellar transport protein 122 homolog, TPR domain	Domain