8HKU

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth AL1P]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8043918 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth AL1P]PF00687e8hkuAL1P2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
C [auth AL1P]PF00687e8hkuAL1P1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
D [auth AL2P]PF00181e8hkuAL2P2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
D [auth AL2P]PF03947e8hkuAL2P1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
E [auth AL3P]PF00297e8hkuAL3P1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
F [auth AL4P]PF00573e8hkuAL4P1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
G [auth AL5P]PF00281,PF00673e8hkuAL5P1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
H [auth AL6P]PF00347e8hkuAL6P2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
I [auth ALX0]PF01775e8hkuALX01 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
J [auth L10E]PF00252e8hkuL10E1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
K [auth L13P]PF00572e8hkuL13P1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
L [auth L141]PF00467e8hkuL1411 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467ECOD (1.6)
M [auth L142]PF00467e8hkuL1421 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467ECOD (1.6)
N [auth L14P]PF00238e8hkuL14P1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
O [auth L15E]PF00827e8hkuL15E1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
P [auth L18E]PF00828e8hkuL18E1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
Q [auth L18P]PF17144e8hkuL18P1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF17144ECOD (1.6)
R [auth L19E]PF01280e8hkuL19E2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
R [auth L19E]PF01280e8hkuL19E1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
S [auth L22P]PF00237e8hkuL22P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
T [auth L23P]PF00276e8hkuL23P1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
U [auth L24E]PF01246e8hkuL24E1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
V [auth L24P]PF16906e8hkuL24P1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
W [auth L29P]PF00831e8hkuL29P1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
X [auth L30E]PF01248e8hkuL30E1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
Y [auth L30P]PF00327e8hkuL30P1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
Z [auth L31E]PF01198e8hkuL31E1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
AA [auth L32E]PF01655e8hkuL32E1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
BA [auth L34E]PF01199e8hkuL34E1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
CA [auth L37A]PF01780e8hkuL37A1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
DA [auth L37E]PF01907e8hkuL37E1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
EA [auth L39E]PF00832e8hkuL39E1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
FA [auth L40E]PF01020e8hkuL40E1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
GA [auth L44E]PF00935e8hkuL44E1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
HA [auth L7A1]PF01248e8hkuL7A11 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
IA [auth L7A2]PF01248e8hkuL7A21 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
JA [auth L15P]PF00828e8hkuL15P1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
KA [auth L21E]PF01157e8hkuL21E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
LA [auth ARF1]PF03465e8hkuARF12 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF03465ECOD (1.6)
LA [auth ARF1]PF03464e8hkuARF11 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF03464ECOD (1.6)
NA [auth L46A]PF18533e8hkuL46A1 A: a+b two layersX: Archaea-specific ribosomal protein L46a (From Topology)H: Archaea-specific ribosomal protein L46a (From Topology)T: Archaea-specific ribosomal protein L46aF: PF18533ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth AL1P]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
D [auth AL2P]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth AL2P]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
E [auth AL3P]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
F [auth AL4P]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth AL5P]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
G [auth AL5P]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
H [auth AL6P]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth ALX0]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
J [auth L10E]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
K [auth L13P]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
L [auth L141],
M [auth L142]
PF00467KOW motif (KOW)KOW motif- Family
N [auth L14P]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
O [auth L15E]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
P [auth L18E]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Q [auth L18P]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
R [auth L19E]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
S [auth L22P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth L23P]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth L24E]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
V [auth L24P]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
V [auth L24P]PF00467KOW motif (KOW)KOW motif- Family
W [auth L29P]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
X [auth L30E]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Y [auth L30P]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
Z [auth L31E]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
AA [auth L32E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
BA [auth L34E]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
CA [auth L37A]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
DA [auth L37E]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
EA [auth L39E]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
FA [auth L40E]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
GA [auth L44E]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
HA [auth L7A1],
IA [auth L7A2]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
JA [auth L15P]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
KA [auth L21E]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
LA [auth ARF1]PF03465eRF1 domain 3 (eRF1_3)eRF1 domain 3The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ...The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site [1]. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.
Domain
LA [auth ARF1]PF03464eRF1 domain 2 (eRF1_2)eRF1 domain 2The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The o ...The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known [1]. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site [1]. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.
Domain
NA [auth L46A]PF18533Domain of unknown function (DUF5622) (DUF5622)Domain of unknown function (DUF5622)This is a domain of unknown function found in archaea-specific ribosomal proteins such as L46a which is suggested to directly bind to rRNA in the ribosome [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth A23S]23s rRNA (2996-MER)---
B [auth A5S]5s rRNA (122-MER)---
C [auth AL1P]50S ribosomal protein L1
D [auth AL2P]50S ribosomal protein L2
E [auth AL3P]50S ribosomal protein L3
F [auth AL4P]50S ribosomal protein L4
G [auth AL5P]50S ribosomal protein L5
H [auth AL6P]50S ribosomal protein L6
I [auth ALX0]50S ribosomal protein L18Ae
J [auth L10E]50S ribosomal protein L10e
K [auth L13P]50S ribosomal protein L13
L [auth L141],
M [auth L142]
50S ribosomal protein L14e
N [auth L14P]50S ribosomal protein L14
O [auth L15E]50S ribosomal protein L15e
P [auth L18E]50S ribosomal protein L18e
Q [auth L18P]50S ribosomal protein L18
R [auth L19E]50S ribosomal protein L19e
S [auth L22P]50S ribosomal protein L22
T [auth L23P]50S ribosomal protein L23
U [auth L24E]50S ribosomal protein L24e
V [auth L24P]50S ribosomal protein L24
W [auth L29P]50S ribosomal protein L29
X [auth L30E]50S ribosomal protein L30e
Y [auth L30P]50S ribosomal protein L30
Z [auth L31E]50S ribosomal protein L31e
AA [auth L32E]50S ribosomal protein L32e
BA [auth L34E]50S ribosomal protein L34e
CA [auth L37A]50S ribosomal protein L37Ae
DA [auth L37E]50S ribosomal protein L37e
EA [auth L39E]50S ribosomal protein L39e
FA [auth L40E]50S ribosomal protein L40E
GA [auth L44E]50S ribosomal protein L44e
HA [auth L7A1],
IA [auth L7A2]
50S ribosomal protein L7Ae
JA [auth L15P]50S ribosomal protein L15
KA [auth L21E]50S ribosomal protein L21e
LA [auth ARF1]Peptide chain release factor subunit 1 -
MA [auth L45A]DUF2280 domain-containing protein- - -
NA [auth L46A]Conserved protein- - -
OA [auth L47A]50S ribosomal protein L47A- - -
PA [auth AETN]E-site tRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth AL1P]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
C [auth AL1P]IPR023669Large ribosomal subunit protein uL1, archaeaFamily
C [auth AL1P]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
C [auth AL1P]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
C [auth AL1P]IPR002143Large ribosomal subunit protein uL1Family
C [auth AL1P]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
D [auth AL2P]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
D [auth AL2P]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth AL2P]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth AL2P]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth AL2P]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth AL2P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth AL2P]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth AL2P]IPR002171Large ribosomal subunit protein uL2Family
E [auth AL3P]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth AL3P]IPR019928Large ribosomal subunit protein uL3, archaealFamily
E [auth AL3P]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth AL3P]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
E [auth AL3P]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth AL3P]IPR000597Large ribosomal subunit protein uL3Family
F [auth AL4P]IPR019970Large ribosomal subunit protein uL4, archaeaFamily
F [auth AL4P]IPR002136Large ribosomal subunit protein uL4Family
F [auth AL4P]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
F [auth AL4P]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth AL5P]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
G [auth AL5P]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth AL5P]IPR022804Large ribosomal subunit protein uL5, archaealFamily
G [auth AL5P]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth AL5P]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth AL5P]IPR002132Large ribosomal subunit protein uL5Family
H [auth AL6P]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth AL6P]IPR019907Large ribosomal subunit protein uL6, archaeaFamily
H [auth AL6P]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
H [auth AL6P]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth AL6P]IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth ALX0]IPR028877Large ribosomal subunit protein eL20Family
I [auth ALX0]IPR023573Large ribosomal subunit protein eL20 domainDomain
J [auth L10E]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
J [auth L10E]IPR022981Large ribosomal subunit protein uL16, archaeaFamily
J [auth L10E]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
J [auth L10E]IPR016180Large ribosomal subunit protein uL16 domainDomain
J [auth L10E]IPR047873Large ribosomal subunit protein uL16Family
J [auth L10E]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
K [auth L13P]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
K [auth L13P]IPR005822Large ribosomal subunit protein uL13Family
K [auth L13P]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
K [auth L13P]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
L [auth L141],
M [auth L142]
IPR023651Large ribosomal subunit protein eL14, archaealFamily
L [auth L141],
M [auth L142]
IPR039660Large ribosomal subunit protein eL14Family
L [auth L141],
M [auth L142]
IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
L [auth L141],
M [auth L142]
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth L141],
M [auth L142]
IPR005824KOWDomain
L [auth L141],
M [auth L142]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth L14P]IPR019971Large ribosomal subunit protein uL14, archaealFamily
N [auth L14P]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
N [auth L14P]IPR000218Large ribosomal subunit protein uL14Family
N [auth L14P]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
O [auth L15E]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
O [auth L15E]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
O [auth L15E]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
O [auth L15E]IPR020926Large ribosomal subunit protein eL15, archaealFamily
O [auth L15E]IPR000439Large ribosomal subunit protein eL15Family
P [auth L18E]IPR022947Large ribosomal subunit protein eL18, archaeaFamily
P [auth L18E]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth L18E]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
P [auth L18E]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
P [auth L18E]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth L18P]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
R [auth L19E]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
R [auth L19E]IPR039547Large ribosomal subunit protein eL19Family
R [auth L19E]IPR033936Large ribosomal subunit protein eL19, archaealDomain
R [auth L19E]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
R [auth L19E]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
R [auth L19E]IPR000196Large ribosomal subunit protein eL19 domainDomain
S [auth L22P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth L22P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth L22P]IPR001063Large ribosomal subunit protein uL22Family
S [auth L22P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
T [auth L23P]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth L23P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth L23P]IPR019985Large ribosomal subunit protein uL23Family
T [auth L23P]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth L23P]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth L24E]IPR023438Large ribosomal subunit protein eL24Family
U [auth L24E]IPR011017TRASH domainDomain
U [auth L24E]IPR000988Large ribosomal subunit protein eL24-relatedFamily
U [auth L24E]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
U [auth L24E]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
V [auth L24P]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
V [auth L24P]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth L24P]IPR005824KOWDomain
V [auth L24P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth L24P]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
W [auth L29P]IPR001854Large ribosomal subunit protein uL29Family
W [auth L29P]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
W [auth L29P]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
X [auth L30E]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
X [auth L30E]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
X [auth L30E]IPR000231Large ribosomal subunit protein eL30Family
X [auth L30E]IPR039109Large ribosomal subunit protein eL30-likeFamily
X [auth L30E]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Y [auth L30P]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
Y [auth L30P]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth L30P]IPR039699Large ribosomal subunit protein uL30Family
Y [auth L30P]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Y [auth L30P]IPR005997Large ribosomal subunit protein uL30, archaealFamily
Z [auth L31E]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
Z [auth L31E]IPR000054Large ribosomal subunit protein eL31Family
AA [auth L32E]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
AA [auth L32E]IPR023654Large ribosomal subunit protein eL32, archaealFamily
AA [auth L32E]IPR001515Large ribosomal subunit protein eL32Family
AA [auth L32E]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
BA [auth L34E]IPR008195Large ribosomal subunit protein eL34Family
BA [auth L34E]IPR047868Large ribosomal subunit protein eL34, archaeal-typeFamily
BA [auth L34E]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
CA [auth L37A]IPR002674Large ribosomal subunit protein eL43Family
CA [auth L37A]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth L37A]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DA [auth L37E]IPR001569Large ribosomal subunit protein eL37Family
DA [auth L37E]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
DA [auth L37E]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth L37E]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
EA [auth L39E]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
EA [auth L39E]IPR000077Large ribosomal subunit protein eL39Family
EA [auth L39E]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
FA [auth L40E]IPR001975Large ribosomal subunit protein eL40 domainDomain
FA [auth L40E]IPR023657Large ribosomal subunit protein eL40, archaealFamily
FA [auth L40E]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
FA [auth L40E]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth L44E]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth L44E]IPR000552Large ribosomal subunit protein eL42Family
HA [auth L7A1],
IA [auth L7A2]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
HA [auth L7A1],
IA [auth L7A2]
IPR022481Large ribosomal subunit protein eL8, archaeaFamily
HA [auth L7A1],
IA [auth L7A2]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
HA [auth L7A1],
IA [auth L7A2]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth L7A1],
IA [auth L7A2]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
JA [auth L15P]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
JA [auth L15P]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth L15P]IPR030878Large ribosomal subunit protein uL15Family
JA [auth L15P]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
JA [auth L15P]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KA [auth L21E]IPR022856Large ribosomal subunit protein eL21, archaealFamily
KA [auth L21E]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
KA [auth L21E]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
KA [auth L21E]IPR001147Large ribosomal subunit protein eL21Family
KA [auth L21E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth ARF1]IPR004403Peptide chain release factor eRF1/aRF1Family
LA [auth ARF1]IPR005141eRF1 domain 2Domain
LA [auth ARF1]IPR020918Peptide chain release factor aRF1Family
LA [auth ARF1]IPR005142eRF1 domain 3Domain
LA [auth ARF1]IPR005140eRF1 domain 1/Pelota-likeDomain
LA [auth ARF1]IPR042226eRF1, domain 2 superfamilyHomologous Superfamily
LA [auth ARF1]IPR024049eRF1, domain 1Homologous Superfamily
LA [auth ARF1]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
NA [auth L46A]IPR041043Domain of unknown function DUF5622Domain