8HIF | pdb_00008hif

One asymmetric unit of Singapore grouper iridovirus capsid

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AB [auth R3]	MIF4G	e8hifR31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
AC [auth a2]	MIF4G	e8hifa21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
BA [auth J1]	MIF4G	e8hifJ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
BB [auth S1]	MIF4G	e8hifS11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
BC [auth a3]	MIF4G	e8hifa31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
BD [auth m2]	MIF4G	e8hifm21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
CB [auth S2]	MIF4G	e8hifS21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
D [auth B1]	MIF4G	e8hifB11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
DA [auth K1]	MIF4G	e8hifK11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
DD [auth n1]	MIF4G	e8hifn11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
EB [auth T1]	MIF4G	e8hifT11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
ED [auth n2]	MIF4G	e8hifn21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
F [auth B3]	MIF4G	e8hifB31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
FB [auth T2]	MIF4G	e8hifT21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
FD [auth n3]	MIF4G	e8hifn31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
FE [auth J2]	MIF4G	e8hifJ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
G [auth C1]	MIF4G	e8hifC11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
GA [auth L1]	MIF4G	e8hifL11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
GB [auth T3]	MIF4G	e8hifT31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
GC [auth d2]	MIF4G	e8hifd21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
GD [auth p1]	MIF4G	e8hifp11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
H [auth C2]	MIF4G	e8hifC21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
HA [auth L2]	MIF4G	e8hifL21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
HB [auth U1]	MIF4G	e8hifU11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
HC [auth d3]	MIF4G	e8hifd31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
HD [auth p2]	MIF4G	e8hifp21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
I [auth C3]	MIF4G	e8hifC31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
IA [auth L3]	MIF4G	e8hifL31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
ID [auth p3]	MIF4G	e8hifp31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
IE [auth c1]	MIF4G	e8hifc11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
JA [auth M1]	MIF4G	e8hifM11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
JC [auth e2]	MIF4G	e8hife21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
JE [auth c2]	MIF4G	e8hifc21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
K [auth D2]	MIF4G	e8hifD21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
KC [auth e3]	MIF4G	e8hife31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
KD [auth r2]	MIF4G	e8hifr21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
KE [auth c3]	MIF4G	e8hifc31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
L [auth D3]	MIF4G	e8hifD31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
LB [auth V2]	MIF4G	e8hifV21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
LE [auth q1]	MIF4G	e8hifq11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
M [auth E1]	MIF4G	e8hifE11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
MA [auth N1]	MIF4G	e8hifN11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
MC [auth f2]	MIF4G	e8hiff21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
ME [auth q2]	MIF4G	e8hifq21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
N [auth E2]	MIF4G	e8hifE21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
NA [auth N2]	MIF4G	e8hifN21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
NB [auth W1]	MIF4G	e8hifW11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
NC [auth f3]	MIF4G	e8hiff31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
NE [auth q3]	MIF4G	e8hifq31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
OA [auth N3]	MIF4G	e8hifN31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
OB [auth W2]	MIF4G	e8hifW21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
OC [auth g1]	MIF4G	e8hifg11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
PA [auth O1]	MIF4G	e8hifO11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
PB [auth W3]	MIF4G	e8hifW31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
PC [auth g2]	MIF4G	e8hifg21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
Q [auth F2]	MIF4G	e8hifF21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
QA [auth O2]	MIF4G	e8hifO21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
QC [auth g3]	MIF4G	e8hifg31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
R [auth F3]	MIF4G	e8hifF31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
RA [auth O3]	MIF4G	e8hifO31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
RC [auth h1]	MIF4G	e8hifh11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
S [auth G1]	MIF4G	e8hifG11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
SB [auth X3]	MIF4G	e8hifX31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
SC [auth h2]	MIF4G	e8hifh21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
T [auth G2]	MIF4G	e8hifG21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
TA [auth P2]	MIF4G	e8hifP21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
TB [auth Y1]	MIF4G	e8hifY11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
TC [auth h3]	MIF4G	e8hifh31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
UB [auth Y2]	MIF4G	e8hifY21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
UC [auth j1]	MIF4G	e8hifj11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
V [auth H1]	MIF4G	e8hifH11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
VA [auth Q1]	MIF4G	e8hifQ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
VB [auth Y3]	MIF4G	e8hifY31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
VC [auth j2]	MIF4G	e8hifj21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
WA [auth Q2]	MIF4G	e8hifQ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
WB [auth Z1]	MIF4G	e8hifZ11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
WC [auth j3]	MIF4G	e8hifj31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
X [auth H3]	MIF4G	e8hifH31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
XA [auth Q3]	MIF4G	e8hifQ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
XB [auth Z2]	MIF4G	e8hifZ21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
XC [auth k1]	MIF4G	e8hifk11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
YA [auth R1]	MIF4G	e8hifR11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
YB [auth Z3]	MIF4G	e8hifZ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
YC [auth k2]	MIF4G	e8hifk21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
Z [auth I2]	MIF4G	e8hifI21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
ZC [auth k3]	MIF4G	e8hifk31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
ZB [auth a1]	MIF4G	e8hifa11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
ZA [auth R2]	MIF4G	e8hifR21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
Y [auth I1]	MIF4G	e8hifI11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
W [auth H2]	MIF4G	e8hifH21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
UA [auth P3]	MIF4G	e8hifP31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
U [auth G3]	MIF4G	e8hifG31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
SA [auth P1]	MIF4G	e8hifP11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
RB [auth X2]	MIF4G	e8hifX21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
QB [auth X1]	MIF4G	e8hifX11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
P [auth F1]	MIF4G	e8hifF11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
O [auth E3]	MIF4G	e8hifE31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
MB [auth V3]	MIF4G	e8hifV31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
LD [auth r3]	MIF4G	e8hifr31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
LC [auth f1]	MIF4G	e8hiff11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
LA [auth M3]	MIF4G	e8hifM31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
KB [auth V1]	MIF4G	e8hifV11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
KA [auth M2]	MIF4G	e8hifM21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
JD [auth r1]	MIF4G	e8hifr11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
JB [auth U3]	MIF4G	e8hifU31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
J [auth D1]	MIF4G	e8hifD11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
IC [auth e1]	MIF4G	e8hife11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
IB [auth U2]	MIF4G	e8hifU21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
FC [auth d1]	MIF4G	e8hifd11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
FA [auth K3]	MIF4G	e8hifK31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
EC [auth b3]	MIF4G	e8hifb31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
EA [auth K2]	MIF4G	e8hifK21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
E [auth B2]	MIF4G	e8hifB21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
DC [auth b2]	MIF4G	e8hifb21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
DB [auth S3]	MIF4G	e8hifS31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
CD [auth m3]	MIF4G	e8hifm31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
CC [auth b1]	MIF4G	e8hifb11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
CA [auth J3]	MIF4G	e8hifJ31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
C [auth A3]	MIF4G	e8hifA31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
B [auth A2]	MIF4G	e8hifA21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
AD [auth m1]	MIF4G	e8hifm11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
AA [auth I3]	MIF4G	e8hifI31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
A [auth A1]	MIF4G	e8hifA11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	PF16903	Major capsid protein N-terminus (Capsid_N)	Major capsid protein N-terminus	This is the N-terminal domain of the major capsid protein in several dsDNA viruses [1].	Domain
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	PF04451	Large eukaryotic DNA virus major capsid protein (Capsid_NCLDV)	Large eukaryotic DNA virus major capsid protein	This family includes the major capsid protein of iridoviruses, chlorella virus and Spodoptera ascovirus, which are all dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein [1]. ...	This family includes the major capsid protein of iridoviruses, chlorella virus and Spodoptera ascovirus, which are all dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein [1]. In Chlorella virus PBCV-1 the major capsid protein is a glycoprotein [2]. The four families of large eukaryotic DNA viruses, Poxviridae, Asfarviridae, Iridoviridae, and Phycodnaviridae, are referred to collectively as nucleocytoplasmic large DNA viruses or NCLDV. The virions of different NCLDV have dramatically different structures. The major capsid proteins of iridoviruses and phycodnaviruses, both of which have icosahedral capsids surrounding an inner lipid membrane, showed a high level of sequence conservation. A more limited, but statistically significant sequence similarity was observed between these proteins and the major capsid protein (p72) of ASFV, which also has an icosahedral capsid. It was surprising, however, to find that all of these proteins shared a conserved domain with the poxvirus protein D13L, which is an integral virion component thought to form a scaffold for the formation of viral crescents and immature virion [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AE [auth y4]	VP88	-	-	cellular anatomical structure membrane
HE [auth y3]	Penton protein (VP14)	-	-	-
CE [auth y6]	VP139	-	-	-
BE [auth y5]	VP59	-	-	-
GE [auth y1], ZD [auth y2]	VP137	-	-	-
DE [auth y7], EE [auth y8], MD [auth s1], ND [auth s2], OD [auth s3], DE [auth y7], EE [auth y8], MD [auth s1], ND [auth s2], OD [auth s3], PD [auth s4], QD [auth s5], RD [auth s6], SD [auth t1], TD [auth t2], UD [auth t3], VD [auth t4], WD [auth t5], XD [auth t6], YD [auth t7]	VP38	-	-	-
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	Major capsid protein	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AE [auth y4]	IPR003472	Virion membrane protein, poxvirus L1-related	Family
DE [auth y7], EE [auth y8], MD [auth s1], ND [auth s2], OD [auth s3], DE [auth y7], EE [auth y8], MD [auth s1], ND [auth s2], OD [auth s3], PD [auth s4], QD [auth s5], RD [auth s6], SD [auth t1], TD [auth t2], UD [auth t3], VD [auth t4], WD [auth t5], XD [auth t6], YD [auth t7]	IPR043882	Protein of unknown function DUF5850	Family
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	IPR031654	Major capsid protein, N-terminal	Domain
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	IPR007542	Major capsid protein, C-terminal	Domain
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	IPR038519	Major capsid protein, C-terminal domain superfamily	Homologous Superfamily
A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], A [auth A1], AA [auth I3], AB [auth R3], AC [auth a2], AD [auth m1], B [auth A2], BA [auth J1], BB [auth S1], BC [auth a3], BD [auth m2], C [auth A3], CA [auth J3], CB [auth S2], CC [auth b1], CD [auth m3], D [auth B1], DA [auth K1], DB [auth S3], DC [auth b2], DD [auth n1], E [auth B2], EA [auth K2], EB [auth T1], EC [auth b3], ED [auth n2], F [auth B3], FA [auth K3], FB [auth T2], FC [auth d1], FD [auth n3], FE [auth J2], G [auth C1], GA [auth L1], GB [auth T3], GC [auth d2], GD [auth p1], H [auth C2], HA [auth L2], HB [auth U1], HC [auth d3], HD [auth p2], I [auth C3], IA [auth L3], IB [auth U2], IC [auth e1], ID [auth p3], IE [auth c1], J [auth D1], JA [auth M1], JB [auth U3], JC [auth e2], JD [auth r1], JE [auth c2], K [auth D2], KA [auth M2], KB [auth V1], KC [auth e3], KD [auth r2], KE [auth c3], L [auth D3], LA [auth M3], LB [auth V2], LC [auth f1], LD [auth r3], LE [auth q1], M [auth E1], MA [auth N1], MB [auth V3], MC [auth f2], ME [auth q2], N [auth E2], NA [auth N2], NB [auth W1], NC [auth f3], NE [auth q3], O [auth E3], OA [auth N3], OB [auth W2], OC [auth g1], P [auth F1], PA [auth O1], PB [auth W3], PC [auth g2], Q [auth F2], QA [auth O2], QB [auth X1], QC [auth g3], R [auth F3], RA [auth O3], RB [auth X2], RC [auth h1], S [auth G1], SA [auth P1], SB [auth X3], SC [auth h2], T [auth G2], TA [auth P2], TB [auth Y1], TC [auth h3], U [auth G3], UA [auth P3], UB [auth Y2], UC [auth j1], V [auth H1], VA [auth Q1], VB [auth Y3], VC [auth j2], W [auth H2], WA [auth Q2], WB [auth Z1], WC [auth j3], X [auth H3], XA [auth Q3], XB [auth Z2], XC [auth k1], Y [auth I1], YA [auth R1], YB [auth Z3], YC [auth k2], Z [auth I2], ZA [auth R2], ZB [auth a1], ZC [auth k3]	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.