8HGL
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8092467 | 3001706 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092471 | 3000282 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092661 | 3002615 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092473 | 3002562 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092473 | 3002562 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092471 | 3000282 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092661 | 3002615 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8092467 | 3001706 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8092467 | 3001706 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092471 | 3000282 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092661 | 3002615 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092473 | 3002562 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16451 | e8hglA3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
A | PF19209 | e8hglA4 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
A | PF09408 | e8hglA2 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
A | PF01601 | e8hglA1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
D [auth B] | PF16451 | e8hglB2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
D [auth B] | PF19209 | e8hglB1 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
D [auth B] | PF09408 | e8hglB3 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
D [auth B] | PF01601 | e8hglB4 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
G [auth E] | PF16451 | e8hglE3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
G [auth E] | PF19209 | e8hglE4 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
G [auth E] | PF09408 | e8hglE2 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
G [auth E] | PF01601 | e8hglE1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
B [auth H] | PF07654 | e8hglH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth H] | PF07686 | e8hglH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth C] | PF07654 | e8hglC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth C] | PF07686 | e8hglC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth F] | PF07654 | e8hglF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H [auth F] | PF07686 | e8hglF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth L] | PF07654 | e8hglL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth L] | PF07686 | e8hglL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth D] | PF07654 | e8hglD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth D] | PF07686 | e8hglD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth G] | PF07654 | e8hglG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
I [auth G] | PF07686 | e8hglG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H], E [auth C], H [auth F] | Heavy Chain | IGHV1 | - | spike glycoprotein | SAbDab (2024-05-10) |
C [auth L], F [auth D], I [auth G] | Light Chain | IGKV3 | Kappa | spike glycoprotein | SAbDab (2024-05-10) |