NPC-trapped pre-60S particle
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth F8] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053109 | 3000334 | SCOP2B (2022-06-29) |
| G [auth f7] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2022-06-29) |
| F [auth O6] | SCOP2B Superfamily | Ribosomal protein L13 | 8066053 | 3001134 | SCOP2B (2022-06-29) |
| IB [auth Ez] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2022-06-29) |
| HB [auth Jy] | SCOP2B Superfamily | RL5-like | 8073884 | 3001709 | SCOP2B (2022-06-29) |
| FB [auth aw] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077127 | 3001045 | SCOP2B (2022-06-29) |
| EB [auth Pv] | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2022-06-29) |
| DB [auth Gu] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2022-06-29) |
| DB [auth Gu] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2022-06-29) |
| BB [auth As] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8098448 | 3001911 | SCOP2B (2022-06-29) |
| AB [auth kr] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2022-06-29) |
| E [auth V5] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103364 | 3000433 | SCOP2B (2022-06-29) |
| ZA [auth Zq] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2022-06-29) |
| XA [auth No] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082481 | 3000210 | SCOP2B (2022-06-29) |
| VA [auth sm] | SCOP2B Superfamily | TMA16-like | 8092815 | 3002626 | SCOP2B (2022-06-29) |
| TA [auth Qk] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095970 | 3001045 | SCOP2B (2022-06-29) |
| SA [auth Hj] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2022-06-29) |
| RA [auth li] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2022-06-29) |
| QA [auth jh] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2022-06-29) |
| LA [auth Xc] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095962 | 3000210 | SCOP2B (2022-06-29) |
| JA [auth ia] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2022-06-29) |
| HA [auth nY] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8103126 | 3001320 | SCOP2B (2022-06-29) |
| C [auth b3] | SCOP2B Superfamily | Ribosomal protein L29e | 8053045 | 3002157 | SCOP2B (2022-06-29) |
| DA [auth YU] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2022-06-29) |
| Y [auth RP] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8077485 | 3000890 | SCOP2B (2022-06-29) |
| X [auth DO] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2022-06-29) |
| X [auth DO] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052815 | 3002143 | SCOP2B (2022-06-29) |
| W [auth AN] | SCOP2B Superfamily | NTF2-like | 8034031 | 3000472 | SCOP2B (2022-06-29) |
| GA [auth EX] | SCOP2B Superfamily | NTF2-like | 8034031 | 3000472 | SCOP2B (2022-06-29) |
| FA [auth CW] | SCOP2B Superfamily | NTF2-like | 8034031 | 3000472 | SCOP2B (2022-06-29) |
| U [auth LL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053159 | 3002162 | SCOP2B (2022-06-29) |
| T [auth DK] | SCOP2B Superfamily | NTF2-like | 8034032 | 3000472 | SCOP2B (2022-06-29) |
| CB [auth Bt] | SCOP2B Superfamily | NTF2-like | 8034032 | 3000472 | SCOP2B (2022-06-29) |
| AA [auth FR] | SCOP2B Superfamily | NTF2-like | 8034032 | 3000472 | SCOP2B (2022-06-29) |
| B [auth g2] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2022-06-29) |
| O [auth UF] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2022-06-29) |
| N [auth yE] | SCOP2B Superfamily | Pentein | 8036230 | 3000640 | SCOP2B (2022-06-29) |
| M [auth CD] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2022-06-29) |
| L [auth cC] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth F8] | UBA | e8hfrF81 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| G [auth f7] | UBA | e8hfrf71 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| F [auth O6] | UBA | e8hfrO61 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| IB [auth Ez] | UBA | e8hfrEz1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| HB [auth Jy] | UBA | e8hfrJy1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| GB [auth ox] | UBA | e8hfrox1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| FB [auth aw] | UBA | e8hfraw1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| EB [auth Pv] | UBA | e8hfrPv1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| DB [auth Gu] | UBA | e8hfrGu1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| BB [auth As] | UBA | e8hfrAs1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| AB [auth kr] | UBA | e8hfrkr1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| E [auth V5] | UBA | e8hfrV51 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| ZA [auth Zq] | UBA | e8hfrZq1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| XA [auth No] | UBA | e8hfrNo1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| VA [auth sm] | UBA | e8hfrsm1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| UA [auth Tl] | UBA | e8hfrTl1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| TA [auth Qk] | UBA | e8hfrQk1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| SA [auth Hj] | UBA | e8hfrHj1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| RA [auth li] | UBA | e8hfrli1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| QA [auth jh] | UBA | e8hfrjh1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| D [auth B4] | UBA | e8hfrB41 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| PA [auth Wg] | UBA | e8hfrWg1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| LA [auth Xc] | UBA | e8hfrXc1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| KA [auth Ib] | UBA | e8hfrIb1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| JA [auth ia] | UBA | e8hfria1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| IA [auth SZ] | UBA | e8hfrSZ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| HA [auth nY] | UBA | e8hfrnY1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| EA [auth vV] | UBA | e8hfrvV1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| C [auth b3] | UBA | e8hfrb31 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| DA [auth YU] | UBA | e8hfrYU1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| BA [auth mS] | UBA | e8hfrmS1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| Z [auth MQ] | UBA | e8hfrMQ1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| Y [auth RP] | UBA | e8hfrRP1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| X [auth DO] | UBA | e8hfrDO1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| W [auth AN] | UBA | e8hfrAN1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| GA [auth EX] | UBA | e8hfrEX1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| FA [auth CW] | UBA | e8hfrCW1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| V [auth KM] | UBA | e8hfrKM1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| U [auth LL] | UBA | e8hfrLL1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| T [auth DK] | UBA | e8hfrDK1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| CB [auth Bt] | UBA | e8hfrBt1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| AA [auth FR] | UBA | e8hfrFR1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| B [auth g2] | UBA | e8hfrg21 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| Q [auth eH] | UBA | e8hfreH1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| P [auth dG] | UBA | e8hfrdG1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| O [auth UF] | UBA | e8hfrUF1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| N [auth yE] | UBA | e8hfryE1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| M [auth CD] | UBA | e8hfrCD1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| L [auth cC] | UBA | e8hfrcC1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
| A [auth h1] | UBA | e8hfrh11 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: UBA | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth F8] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| F [auth O6] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| E [auth V5] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| D [auth B4] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| IA [auth SZ] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| DA [auth YU] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| DA [auth YU] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| Z [auth MQ] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| Z [auth MQ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| Y [auth RP] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| Y [auth RP] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| X [auth DO] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| X [auth DO] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| FA [auth CW], GA [auth EX], W [auth AN] | PF24048 | NXF1/2/3/5 leucine-rich repeat domain (LRR_NXF1-5) | NXF1/2/3/5 leucine-rich repeat domain | - | Repeat |
| FA [auth CW], GA [auth EX], W [auth AN] | PF18444 | RNA recognition motif (RRM_9) | RNA recognition motif | The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the principal mRNA export factor in Saccharomyces cerevisiae. Mex67 is a member of the NXF family of proteins and has conserved homologs through eukaryotes from yeast to humans. Although s ... | Domain |
| FA [auth CW], GA [auth EX], W [auth AN] | PF22602 | Nuclear RNA export factor, NTF2 domain (NXF_NTF2) | Nuclear RNA export factor, NTF2 domain | This entry represents the NTF2 domain of nuclear RNA export factors (NFX), proteins that are involved in the nuclear export of mRNAs [1-5]. | Domain |
| V [auth KM] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| V [auth KM] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| U [auth LL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| AA [auth FR], CB [auth Bt], T [auth DK] | PF10429 | Nuclear pore RNA shuttling protein Mtr2 (Mtr2) | Nuclear pore RNA shuttling protein Mtr2 | Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucle ... | Domain |
| O [auth UF] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |














