8HCR
Cryo-EM structure of the Mycobacterium tuberculosis cytochrome bcc:aa3 supercomplex and a novel inhibitor targeting subunit cytochrome cI
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth E] | PF00116 | e8hcrE2 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: PF00116 | ECOD (1.6) |
D [auth E] | F_UNCLASSIFIED | e8hcrE1 | A: extended segments | X: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | T: Cytochrome c oxidase subunit II-like, transmembrane region | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth Q] | PF00116 | e8hcrQ2 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: PF00116 | ECOD (1.6) |
M [auth Q] | F_UNCLASSIFIED | e8hcrQ1 | A: extended segments | X: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | T: Cytochrome c oxidase subunit II-like, transmembrane region | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | PF00115 | e8hcrF1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: PF00115 | ECOD (1.6) |
N [auth R] | PF00115 | e8hcrR1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: PF00115 | ECOD (1.6) |
F [auth G] | PF00510 | e8hcrG1 | A: alpha bundles | X: Cytochrome c oxidase subunit III-like (From Topology) | H: Cytochrome c oxidase subunit III-like (From Topology) | T: Cytochrome c oxidase subunit III-like | F: PF00510 | ECOD (1.6) |
O [auth S] | PF00510 | e8hcrS1 | A: alpha bundles | X: Cytochrome c oxidase subunit III-like (From Topology) | H: Cytochrome c oxidase subunit III-like (From Topology) | T: Cytochrome c oxidase subunit III-like | F: PF00510 | ECOD (1.6) |
R [auth V] | PF17174 | e8hcrV1 | A: a+b three layers | X: thylakoid acid phosphatase domain-related (From Topology) | H: thylakoid acid phosphatase domain-related (From Topology) | T: thylakoid acid phosphatase domain-related | F: PF17174 | ECOD (1.6) |
I [auth J] | PF17174 | e8hcrJ1 | A: a+b three layers | X: thylakoid acid phosphatase domain-related (From Topology) | H: thylakoid acid phosphatase domain-related (From Topology) | T: thylakoid acid phosphatase domain-related | F: PF17174 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, J [auth M] | PF19297 | QcrA subunit N-terminal region (QcrA_N) | QcrA subunit N-terminal region | - | Family |
A, J [auth M] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
B, K [auth N] | PF13631 | Cytochrome b(N-terminal)/b6/petB (Cytochrom_B_N_2) | Cytochrome b(N-terminal)/b6/petB | - | Domain |
C, L [auth O] | PF13442 | Cytochrome C oxidase, cbb3-type, subunit III (Cytochrome_CBB3) | Cytochrome C oxidase, cbb3-type, subunit III | - | Domain |
C, L [auth O] | PF00034 | Cytochrome c (Cytochrom_C) | Cytochrome c | The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. | Domain |
E [auth F], N [auth R] | PF00115 | Cytochrome C and Quinol oxidase polypeptide I (COX1) | Cytochrome C and Quinol oxidase polypeptide I | - | Family |
F [auth G], O [auth S] | PF00510 | Cytochrome c oxidase subunit III (COX3) | Cytochrome c oxidase subunit III | - | Family |
G [auth H], P [auth T] | PF12270 | Cytochrome c oxidase subunit IV (Cyt_c_ox_IV) | Cytochrome c oxidase subunit IV | - | Family |
I [auth J], R [auth V] | PF17174 | Domain of unknown function (DUF5130) (DUF5130) | Domain of unknown function (DUF5130) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex IV (cytochrome c oxidase) | Cytochrome c oxidases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |