8H64

Crystal structure of Internalin A from Listeria monocytogenes with nanobody VHH24 bound

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	L domain-like	8035149	3001010	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8055067	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	E set domains	8055067	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	L domain-like	8035149	3001010	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	L domain-like	8035149	3001010	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	E set domains	8055067	3000070	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	E set domains	8055067	3000070	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	L domain-like	8035149	3001010	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF08191	e8h64A3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
A	PF12799	e8h64A1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
A	PF12354	e8h64A2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)
C	PF08191	e8h64C3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
C	PF12799	e8h64C2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
C	PF12354	e8h64C1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)
E	PF08191	e8h64E2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
E	PF12799	e8h64E3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
E	PF12354	e8h64E1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)
G	PF08191	e8h64G2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
G	PF12799	e8h64G3	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
G	PF12354	e8h64G1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)
B	PF07686	e8h64B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
D	PF07686	e8h64D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
F	PF07686	e8h64F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
H	PF07686	e8h64H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B, D, F, H	Heavy Chain	IGHV1	-	internalin a	SAbDab (2024-05-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	Internalin A	-	-	extracellular region cellular anatomical entity cell periphery external encapsulating structure cell wall peptidoglycan-based cell wall
B, D, F, H	Anti-internalin A VHH24	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR025875	Leucine rich repeat 4	Repeat
A, C, E, G	IPR013378	Internalin B-like, B-repeat	Repeat
A, C, E, G	IPR001611	Leucine-rich repeat	Repeat
A, C, E, G	IPR012569	Internalin, Ig-like inter-repeat region	Domain
A, C, E, G	IPR024634	Internalin, N-terminal	Domain
A, C, E, G	IPR042229	Listeria-Bacteroides repeat domain superfamily	Homologous Superfamily
A, C, E, G	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, C, E, G	IPR047600	Internalin A	Family
A, C, E, G	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, C, E, G	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, C, E, G	IPR014755	Copper resistance protein CopC/internalin, immunoglobulin-like	Homologous Superfamily
A, C, E, G	IPR019931	LPXTG cell wall anchor domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.