8GZ7 | pdb_00008gz7

Octahedral supramolecular assembly of the bicomponent gamma-hemolysin octameric pore complexes from Staphylococcus aureus Newman.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Leukocidin-like	8074054	3000256	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	Leukocidin-like	8074054	3000256	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Leukocidin-like	8074054	3000256	SCOP2B (2022-06-29)
E [auth B]	SCOP2B Superfamily	Leukocidin-like	8074054	3000256	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	Leukocidin-like	8037946	3000256	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	Leukocidin-like	8037946	3000256	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Leukocidin-like	8037946	3000256	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Leukocidin-like	8037946	3000256	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	F_UNCLASSIFIED	e8gz7H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
G [auth F]	F_UNCLASSIFIED	e8gz7F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth D]	F_UNCLASSIFIED	e8gz7D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth B]	F_UNCLASSIFIED	e8gz7B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth G]	F_UNCLASSIFIED	e8gz7G1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth E]	F_UNCLASSIFIED	e8gz7E1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth C]	F_UNCLASSIFIED	e8gz7C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8gz7A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Leukocidin-like (From Topology)	T: Leukocidin-like	F: F_UNCLASSIFIED	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (utative)
G [auth F]	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (utative)
F [auth D]	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (utative)
E [auth B]	2.70.240.10	Mainly Beta	Distorted Sandwich	Leukocidin-like	Leukocidin/porin MspA	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth B], F [auth D], G [auth F], H	PF07968	Leukocidin/Hemolysin toxin family (Leukocidin)	Leukocidin/Hemolysin toxin family		Domain
A, B [auth C], C [auth E], D [auth G]	PF07968	Leukocidin/Hemolysin toxin family (Leukocidin)	Leukocidin/Hemolysin toxin family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth B], F [auth D], G [auth F], H	Gamma-hemolysin component A	toxin activity	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure extracellular region
A, B [auth C], C [auth E], D [auth G]	Gamma-hemolysin component B	toxin activity	biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth B], F [auth D], G [auth F], H	IPR016183	Leukocidin/Hemolysin toxin	Domain
E [auth B], F [auth D], G [auth F], H	IPR036435	Leukocidin/porin MspA superfamily	Homologous Superfamily
E [auth B], F [auth D], G [auth F], H	IPR003963	Bi-component toxin, staphylococci	Family
A, B [auth C], C [auth E], D [auth G]	IPR016183	Leukocidin/Hemolysin toxin	Domain
A, B [auth C], C [auth E], D [auth G]	IPR036435	Leukocidin/porin MspA superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR003963	Bi-component toxin, staphylococci	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth C], C [auth E], D [auth G], E [auth B] A, B [auth C], C [auth E], D [auth G], E [auth B], F [auth D], G [auth F], H	OPM	Transmembrane	Beta-barrel transmembrane	Pore-forming beta-sheet toxins	Aerolysin (n=14,S=14 or n=16,S=16)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.