8GME
Crystal structure of the gp32-Dda-dT17 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041966 | 3000135 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041966 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | PF18343 | e8gmeC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18343 | ECOD (1.6) |
B [auth C] | PF13245 | e8gmeC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13245 | ECOD (1.6) |
B [auth C] | PF13538 | e8gmeC3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13538 | ECOD (1.6) |
D | PF18343 | e8gmeD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18343 | ECOD (1.6) |
D | PF13538 | e8gmeD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13538 | ECOD (1.6) |
D | PF13604 | e8gmeD3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13604 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF08804 | gp32 DNA binding protein like (gp32) | gp32 DNA binding protein like | gp32 is a single stranded (ss) DNA binding protein in bacteriophage T4 that is essential for DNA replication, recombination and repair. The ssDNA binding cleft of gp32 comprises regions from three structural subdomains [1]. | Domain |
B [auth C], D | PF18343 | Dda helicase SH3 domain (SH3_14) | Dda helicase SH3 domain | This is a Src homology-3 (SH3) like beta-barrel domain which can be found in Dda enzyme. Dda is a phage T4 SF1B helicase. The Dda SH3 domain contains two insertions (compared to RecD2), a second beta-ribbon that is referred to as the hook and a beta- ... | Domain |
B [auth C], D | PF13245 | AAA domain (AAA_19) | AAA domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR044947 | Bacteriophage T4, Gp32, single-stranded DNA-binding superfamily | Homologous Superfamily |
A, C [auth B] | IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |
A, C [auth B] | IPR046395 | Bacteriophage T4, Gp32, single-stranded DNA-binding | Family |
A, C [auth B] | IPR012339 | Bacteriophage T4, Gp32, single-stranded DNA-binding domain | Domain |
B [auth C], D | IPR041214 | Dda helicase SH3 domain | Domain |
B [auth C], D | IPR003593 | AAA+ ATPase domain | Domain |
B [auth C], D | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |