8GKC | pdb_00008gkc

Atomic model of the core modifying region of human fatty acid synthase in complex with TVB-2640 - C2 refinement

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth D]	SCOP2B Superfamily	SDR-like	8055961	3000038	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SDR-like	8055961	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth D]	Gasdermin	e8gkcD1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Gasdermin	ECOD (v294.1)
A	Gasdermin	e8gkcA1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Gasdermin	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D]	PF00107	Zinc-binding dehydrogenase (ADH_zinc_N)	Zinc-binding dehydrogenase		Domain
A, B [auth D]	PF08659	KR domain (KR)	KR domain	-	Family
A, B [auth D]	PF21149	Fatty acid synthase, pseudo-KR domain (FAS_pseudo-KR)	Fatty acid synthase, pseudo-KR domain	Fatty acid synthase is a multifunctional enzyme that catalyses the de novo biosynthesis of long-chain saturated fatty acids, starting from acetyl-CoA and malonyl-CoA in the presence of NADPH [1-3]. This entry represents the pseudo-ketoreductase (pseu ...	Fatty acid synthase is a multifunctional enzyme that catalyses the de novo biosynthesis of long-chain saturated fatty acids, starting from acetyl-CoA and malonyl-CoA in the presence of NADPH [1-3]. This entry represents the pseudo-ketoreductase (pseudo-KR) domain which is catalytically inactive and supports the integrity of the active KR domain [1,3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D]	Fatty acid synthase	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity acetyltransferase activity acyltransferase activity [acyl-carrier-protein] S-acetyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity S-acetyltransferase activity S-acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity malonyltransferase activity 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity acetyltransferase activity acyltransferase activity [acyl-carrier-protein] S-acetyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity S-acetyltransferase activity S-acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity malonyltransferase activity [acyl-carrier-protein] S-malonyltransferase activity S-malonyltransferase activity cell adhesion molecule binding cadherin binding protein binding binding fatty acid synthase activity identical protein binding vitamin binding modified amino acid binding ion binding anion binding phosphopantetheine binding sulfur compound binding small molecule binding fatty acyl-[ACP] hydrolase activity hydrolase activity, acting on ester bonds thiolester hydrolase activity hydrolase activity RNA binding nucleic acid binding oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor enoyl-[acyl-carrier-protein] reductase [NAD(P)H] activity oxidoreductase activity, acting on the CH-CH group of donors enoyl-[acyl-carrier-protein] reductase (NADPH) activity (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity hydro-lyase activity lyase activity carbon-oxygen lyase activity	response to interleukin-4 response to peptide response to stimulus response to chemical response to cytokine cellular response to cytokine stimulus cellular response to interleukin-4 developmental process epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development response to interleukin-4 response to peptide response to stimulus response to chemical response to cytokine cellular response to cytokine stimulus cellular response to interleukin-4 developmental process epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development establishment of endothelial intestinal barrier epithelial cell development cell differentiation establishment of endothelial barrier anatomical structure development cellular process mammary gland development gland development animal organ development biosynthetic process glycerol ether biosynthetic process ether lipid metabolic process lipid biosynthetic process primary metabolic process metabolic process ether lipid biosynthetic process lipid metabolic process ether biosynthetic process response to nutrient levels response to caloric restriction response to stress biological process involved in interspecies interaction between organisms host-mediated perturbation of viral process modulation of process of another organism host-mediated perturbation of symbiont process myeloid leukocyte differentiation hemopoiesis mononuclear cell differentiation myeloid cell differentiation monocyte differentiation leukocyte differentiation nucleoside phosphate metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process small molecule metabolic process phosphorus metabolic process multicellular organismal process ossification osteoblast differentiation granulocyte differentiation neutrophil differentiation fatty-acyl-CoA biosynthetic process purine-containing compound biosynthetic process acyl-CoA biosynthetic process fatty-acyl-CoA metabolic process fatty acid derivative biosynthetic process nucleobase-containing compound biosynthetic process fatty acid derivative metabolic process sulfur compound biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process monocarboxylic acid metabolic process organic acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process defense response inflammatory response response to nutrient	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol glycogen granule cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol glycogen granule intracellular organelle Golgi apparatus intracellular membrane-bounded organelle endomembrane system pigment granule intracellular vesicle melanosome cytoplasmic vesicle cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D]	IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	Homologous Superfamily
A, B [auth D]	IPR013217	Methyltransferase type 12	Domain
A, B [auth D]	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain
A, B [auth D]	IPR049552	Polyketide synthase, dehydratase domain, N-terminal	Domain
A, B [auth D]	IPR049900	Polyketide synthase, dehydratase domain	Domain
A, B [auth D]	IPR016036	Malonyl-CoA ACP transacylase, ACP-binding	Homologous Superfamily
A, B [auth D]	IPR014043	Acyl transferase domain	Domain
A, B [auth D]	IPR020843	Enoylreductase domain	Domain
A, B [auth D]	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
A, B [auth D]	IPR032821	Polyketide synthase, C-terminal extension	Domain
A, B [auth D]	IPR011032	GroES-like superfamily	Homologous Superfamily
A, B [auth D]	IPR009081	Phosphopantetheine binding ACP domain	Domain
A, B [auth D]	IPR013968	Polyketide synthase-like, ketoreductase domain	Domain
A, B [auth D]	IPR016039	Thiolase-like	Homologous Superfamily
A, B [auth D]	IPR001227	Acyl transferase domain superfamily	Homologous Superfamily
A, B [auth D]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B [auth D]	IPR018201	Beta-ketoacyl synthase, active site	Active Site
A, B [auth D]	IPR001031	Thioesterase	Domain
A, B [auth D]	IPR006162	Phosphopantetheine attachment site	PTM
A, B [auth D]	IPR057326	Ketoreductase domain	Domain
A, B [auth D]	IPR049391	Fatty acid synthase, pseudo-KR domain	Domain
A, B [auth D]	IPR050091	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Family
A, B [auth D]	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
A, B [auth D]	IPR020807	Polyketide/metazoan fatty acid synthase-like, dehydratase domain	Domain
A, B [auth D]	IPR036736	ACP-like superfamily	Homologous Superfamily
A, B [auth D]	IPR020806	Polyketide synthase-like, phosphopantetheine-binding domain	Domain
A, B [auth D]	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B [auth D]	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
A, B [auth D]	IPR013149	Alcohol dehydrogenase-like, C-terminal	Domain
A, B [auth D]	IPR042104	Polyketide synthase, dehydratase domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B [auth D]	Pharos: P49327	liposarcoma obesity disorder intellectual disability melanoma acute coronary syndrome breast carcinoma dilated cardiomyopathy hypertrophic cardiomyopathy cancer chronic kidney disease esophageal squamous cell carcinoma pleomorphic liposarcoma breast cancer congestive heart failure drug-induced liver injury liposarcoma obesity disorder intellectual disability melanoma acute coronary syndrome breast carcinoma dilated cardiomyopathy hypertrophic cardiomyopathy cancer chronic kidney disease esophageal squamous cell carcinoma pleomorphic liposarcoma breast cancer congestive heart failure drug-induced liver injury osteosarcoma glioblastoma pancreatic ductal adenocarcinoma Heart Failure, Right-Sided hepatocellular carcinoma type 2 diabetes mellitus interstitial cystitis atypical teratoid rhabdoid tumor malignant glioma cutaneous melanoma myopathy Emery-Dreifuss muscular dystrophy ovarian cancer pituitary cancer psoriasis ulcerative colitis large cell medulloblastoma benign neoplasm Dedifferentiated liposarcoma dilated cardiomyopathy 1A oligodendroglioma ovarian neoplasm heart failure subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type lung adenocarcinoma non-alcoholic fatty liver disease