Annotations: 8GHU

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth m]	SCOP2B Superfamily	S13-like H2TH domain	8098358	3000053	SCOP2B (2022-06-29)
K [auth o]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8032375	3001284	SCOP2B (2022-06-29)
L [auth p]	SCOP2B Superfamily	Ribosomal protein S16	8106547	3000680	SCOP2B (2022-06-29)
M [auth q]	SCOP2B Superfamily	Nucleic acid-binding proteins	8059276	3000135	SCOP2B (2022-06-29)
D [auth d]	SCOP2B Superfamily	Alpha-L RNA-binding motif	8083400	3001473	SCOP2B (2022-06-29)
F [auth f]	SCOP2B Superfamily	Ribosomal protein S6	8066495	3001323	SCOP2B (2022-06-29)
G [auth g]	SCOP2B Superfamily	Ribosomal protein S7	8077979	3000799	SCOP2B (2022-06-29)
H [auth h]	SCOP2B Superfamily	Ribosomal protein S8	8079059	3000709	SCOP2B (2022-06-29)
I [auth l]	SCOP2B Superfamily	Nucleic acid-binding proteins	8106545	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e8ghuA1	A: alpha arrays	X: RuvA-C	H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology)	T: RuvA-C, UBA, CRAL/TRIO-N, HBS1	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF07091	e8ghuA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF07091	ECOD (1.6)
J [auth m]	PF00416	e8ghum1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: PF00416	ECOD (1.6)
K [auth o]	PF00312	e8ghuo1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)
L [auth p]	PF00886	e8ghup1	A: a+b two layers	X: Ribosomal protein S16 (From Topology)	H: Ribosomal protein S16 (From Topology)	T: Ribosomal protein S16	F: PF00886	ECOD (1.6)
M [auth q]	PF00366	e8ghuq1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366	ECOD (1.6)
N [auth r]	PF01084	e8ghur1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF01084	ECOD (1.6)
O [auth t]	PF01649	e8ghut1	A: alpha bundles	X: Spectrin repeat-like	H: Ribosomal protein S20 (From Topology)	T: Ribosomal protein S20	F: PF01649	ECOD (1.6)
C [auth c]	PF00189	e8ghuc1	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: PF00189	ECOD (1.6)
C [auth c]	PF07650	e8ghuc2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: PF07650	ECOD (1.6)
D [auth d]	PF00163,PF01479	e8ghud1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
E [auth e]	PF03719	e8ghue2	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
E [auth e]	PF00333	e8ghue1	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
F [auth f]	PF01250	e8ghuf1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: PF01250	ECOD (1.6)
G [auth g]	PF00177	e8ghug1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: PF00177	ECOD (1.6)
H [auth h]	PF00410	e8ghuh2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
H [auth h]	PF00410	e8ghuh1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
I [auth l]	PF00164	e8ghul1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)

AMR Gene: CARD Annotation CARD Database Homepage

Chains	Accession	Short Name	Description	Provenance Source (Version)
A	ARO:3000861	rmtC	RmtC is a rRNA methyltransferase found in Proteus mirabilis with high level resistance to similar to aminoglycosides, with the exception of non-4,6-disubstituted deoxystreptamines (streptomycin and neomycin). It has also been isolated in Salmonella enterica ser. Virchow. It is hypothesized to methylate G1405, like related methyltransferases RmtA, RmtB, and ArmA.	CARD (3.2.9)

AMR Gene Family: CARD Annotation CARD Database Homepage

Chains	Accession	Gene Family	Drug Class	Resistance Machanism	Provenance Source (Version)
A	ARO:3004271	16S rRNA methyltransferase (G1405)	aminoglycoside antibiotic	antibiotic target alteration	CARD (3.2.9)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07091	Ribosomal RNA methyltransferase (FmrO) (FmrO)	Ribosomal RNA methyltransferase (FmrO)	-	Family
J [auth m]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
K [auth o]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
L [auth p]	PF00886	Ribosomal protein S16 (Ribosomal_S16)	Ribosomal protein S16	-	Family
M [auth q]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
N [auth r]	PF01084	Ribosomal protein S18 (Ribosomal_S18)	Ribosomal protein S18	-	Family
O [auth t]	PF01649	Ribosomal protein S20 (Ribosomal_S20p)	Ribosomal protein S20	-	Family
C [auth c]	PF07650	KH domain (KH_2)	KH domain	-	Domain
C [auth c]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
D [auth d]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
D [auth d]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
E [auth e]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
E [auth e]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain	-	Domain
F [auth f]	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6	-	Domain
G [auth g]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
H [auth h]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
I [auth l]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	16S rRNA (guanine(1405)-N(7))-methyltransferase	RNA methyltransferase activity rRNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity	response to stimulus response to chemical response to antibiotic	-
J [auth m]	30S ribosomal protein S13	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding tRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm cytosol cytosolic small ribosomal subunit cytosolic ribosome
K [auth o]	30S ribosomal protein S15	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding small ribosomal subunit rRNA binding translation regulator activity mRNA base-pairing translational repressor activity mRNA binding translation repressor activity structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
L [auth p]	30S ribosomal protein S16	DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on a nucleic acid hydrolase activity catalytic activity DNA nuclease activity DNA secondary structure binding DNA binding binding organic cyclic compound binding four-way junction DNA binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on a nucleic acid hydrolase activity catalytic activity DNA nuclease activity DNA secondary structure binding DNA binding binding organic cyclic compound binding four-way junction DNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytosolic small ribosomal subunit cytosolic ribosome cytoplasm protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytosolic small ribosomal subunit cytosolic ribosome cytoplasm cytosol
M [auth q]	30S ribosomal protein S17	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding small ribosomal subunit rRNA binding molecular adaptor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding small ribosomal subunit rRNA binding molecular adaptor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to antibiotic ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
N [auth r]	30S ribosomal protein S18	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding mRNA 5'-UTR binding mRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
O [auth t]	30S ribosomal protein S20	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding enzyme regulator activity molecular function inhibitor activity ornithine decarboxylase regulator activity molecular function regulator activity enzyme inhibitor activity ornithine decarboxylase inhibitor activity structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex small ribosomal subunit ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytosolic small ribosomal subunit intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex small ribosomal subunit ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytosolic small ribosomal subunit cytosolic ribosome
B [auth a]	16S rRNA	-	-	-
C [auth c]	30S ribosomal protein S3	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
D [auth d]	30S ribosomal protein S4	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding mRNA 5'-UTR binding mRNA binding translation regulator activity mRNA regulatory element binding translation repressor activity translation regulator activity, nucleic acid binding translation repressor activity structural molecule activity structural constituent of ribosome	negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process negative regulation of termination of DNA-templated transcription regulation of cellular process negative regulation of biological process protein-containing complex disassembly positive regulation of macromolecule biosynthetic process regulation of protein-containing complex disassembly negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process cellular component disassembly negative regulation of DNA-templated transcription regulation of biological process negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process primary metabolic process negative regulation of cellular biosynthetic process regulation of gene expression organic cyclic compound metabolic process biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process regulation of termination of DNA-templated transcription regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process regulation of cellular component organization transcription antitermination cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process DNA-templated transcription termination RNA biosynthetic process cellular component organization nucleic acid biosynthetic process organic substance metabolic process positive regulation of biosynthetic process negative regulation of protein-containing complex disassembly negative regulation of cellular process cellular component organization or biogenesis positive regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process protein-containing complex organization biological regulation regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of gene expression negative regulation of biosynthetic process cellular process positive regulation of cellular biosynthetic process organonitrogen compound metabolic process organonitrogen compound biosynthetic process translation cytoplasmic translation protein metabolic process response to stimulus response to chemical response to antibiotic cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis ribosomal small subunit biogenesis post-transcriptional regulation of gene expression negative regulation of translation translational initiation negative regulation of protein metabolic process regulation of translational initiation regulation of protein metabolic process negative regulation of translational initiation negative regulation of gene expression regulation of translation organelle assembly non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribosome assembly maintenance of translational fidelity	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm cytosol cytosolic small ribosomal subunit cytosolic ribosome
E [auth e]	30S ribosomal protein S5	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to antibiotic ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly maintenance of translational fidelity	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
F [auth f]	30S ribosomal protein S6, non-modified isoform	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding mRNA 5'-UTR binding mRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
G [auth g]	30S ribosomal protein S7	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding rRNA binding tRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation organic substance metabolic process organic substance biosynthetic process negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation organic substance metabolic process organic substance biosynthetic process negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cytoplasmic translation ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
H [auth h]	30S ribosomal protein S8	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression organic substance metabolic process organic substance biosynthetic process protein metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process biological regulation regulation of cellular process cellular biosynthetic process organonitrogen compound biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression organic substance metabolic process organic substance biosynthetic process protein metabolic process regulation of biosynthetic process regulation of biological process organonitrogen compound metabolic process cellular metabolic process regulation of protein metabolic process biological regulation regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process negative regulation of biological process negative regulation of cellular metabolic process nucleobase-containing compound metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process negative regulation of metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process negative regulation of gene expression negative regulation of macromolecule biosynthetic process nucleic acid catabolic process catabolic process RNA metabolic process macromolecule catabolic process regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of catabolic process mRNA metabolic process nucleic acid metabolic process organic cyclic compound catabolic process regulation of mRNA stability negative regulation of biosynthetic process regulation of RNA stability regulation of mRNA metabolic process organic substance catabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly cytoplasmic translation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
I [auth l]	30S ribosomal protein S12	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding misfolded RNA binding tRNA binding structural molecule activity structural constituent of ribosome	regulation of cellular process cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process regulation of RNA metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of cellular process cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process regulation of RNA metabolic process organic substance metabolic process positive regulation of biosynthetic process organic substance biosynthetic process positive regulation of macromolecule metabolic process RNA processing regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biosynthetic process RNA splicing positive regulation of nucleobase-containing compound metabolic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression regulation of RNA splicing macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process positive regulation of gene expression metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of RNA splicing regulation of metabolic process positive regulation of cellular biosynthetic process organonitrogen compound metabolic process organonitrogen compound biosynthetic process translation cytoplasmic translation protein metabolic process RNA folding Group I intron splicing RNA splicing, via transesterification reactions with guanosine as nucleophile RNA splicing, via transesterification reactions response to stimulus response to chemical response to antibiotic maintenance of translational fidelity	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR025981	Ribosomal RNA aminoglycoside-resistance methyltransferase	Family
A	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A	IPR010769	Ribosomal RNA aminoglycoside-resistance methyltransferase, Gram-negative bacteria	Family
J [auth m]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
J [auth m]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
J [auth m]	IPR001892	Small ribosomal subunit protein uS13	Family
J [auth m]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
J [auth m]	IPR019980	Small ribosomal subunit protein uS13, bacterial-type	Family
K [auth o]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
K [auth o]	IPR000589	Small ribosomal subunit protein uS15	Family
K [auth o]	IPR005290	Small ribosomal subunit protein uS15, bacterial-type	Family
L [auth p]	IPR023803	Small ribosomal subunit protein bS16 domain superfamily	Homologous Superfamily
L [auth p]	IPR000307	Small ribosomal subunit protein bS16	Family
L [auth p]	IPR020592	Small ribosomal subunit protein bS16, conserved site	Conserved Site
M [auth q]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
M [auth q]	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
M [auth q]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
M [auth q]	IPR000266	Small ribosomal subunit protein uS17	Family
N [auth r]	IPR001648	Small ribosomal subunit protein bS18	Family
N [auth r]	IPR018275	Small ribosomal subunit protein bS18, conserved site	Conserved Site
N [auth r]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
O [auth t]	IPR036510	Small ribosomal subunit protein bS20 superfamily	Homologous Superfamily
O [auth t]	IPR002583	Small ribosomal subunit protein bS20	Family
C [auth c]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
C [auth c]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
C [auth c]	IPR004087	K Homology domain	Domain
C [auth c]	IPR004044	K Homology domain, type 2	Domain
C [auth c]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
C [auth c]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
C [auth c]	IPR005704	Small ribosomal subunit protein uS3, bacterial-type	Family
C [auth c]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
D [auth d]	IPR002942	RNA-binding S4 domain	Domain
D [auth d]	IPR005709	Small ribosomal subunit protein uS4, bacterial-type	Family
D [auth d]	IPR022801	Small ribosomal subunit protein uS4	Family
D [auth d]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
D [auth d]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
D [auth d]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
E [auth e]	IPR000851	Small ribosomal subunit protein uS5	Family
E [auth e]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
E [auth e]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
E [auth e]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
E [auth e]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
E [auth e]	IPR005712	Small ribosomal subunit protein uS5, bacterial-type	Family
E [auth e]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
F [auth f]	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
F [auth f]	IPR000529	Small ribosomal subunit protein bS6	Family
F [auth f]	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
F [auth f]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
F [auth f]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
G [auth g]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
G [auth g]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
G [auth g]	IPR000235	Small ribosomal subunit protein uS7	Family
G [auth g]	IPR005717	Small ribosomal subunit protein uS7, bacterial/organellar-type	Family
G [auth g]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
H [auth h]	IPR000630	Small ribosomal subunit protein uS8	Family
H [auth h]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
H [auth h]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
I [auth l]	IPR005679	Ribosomal protein uS12, bacterial-type	Family
I [auth l]	IPR006032	Small ribosomal subunit protein uS12	Family
I [auth l]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily