8GHF | pdb_00008ghf

cryo-EM structure of hSlo1 in plasma membrane vesicles

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	F_UNCLASSIFIED	e8ghfD2	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: F_UNCLASSIFIED	ECOD (1.6)
D	F_UNCLASSIFIED	e8ghfD1	A: a+b two layers	X: TrkA C-terminal domain-like (From Topology)	H: TrkA C-terminal domain-like (From Topology)	T: TrkA C-terminal domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
D	F_UNCLASSIFIED	e8ghfD3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e8ghfC4	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e8ghfC5	A: a+b two layers	X: TrkA C-terminal domain-like (From Topology)	H: TrkA C-terminal domain-like (From Topology)	T: TrkA C-terminal domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e8ghfC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e8ghfB2	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e8ghfB4	A: a+b two layers	X: TrkA C-terminal domain-like (From Topology)	H: TrkA C-terminal domain-like (From Topology)	T: TrkA C-terminal domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e8ghfB5	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8ghfA4	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8ghfA1	A: a+b two layers	X: TrkA C-terminal domain-like (From Topology)	H: TrkA C-terminal domain-like (From Topology)	T: TrkA C-terminal domain-like	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e8ghfA5	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21014	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain (Slowpoke_C)	Ca2+-activated K+ channel Slowpoke, TrkA_C like domain	This domain is found at the cytoplasmic C-terminus of the drosophila slowpoke K+ channel. It is related to the TrkA C-terminal domain Pfam:PF02080.	Domain
A, B, C, D	PF03493	Calcium-activated BK potassium channel alpha subunit (BK_channel_a)	Calcium-activated BK potassium channel alpha subunit	-	Family
A, B, C, D	PF07885	Ion channel (Ion_trans_2)	Ion channel	-	Family
A, B, C, D	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family
A, B, C, D	PF22614	Calcium-activated potassium channel slowpoke-like RCK domain (Slo-like_RCK)	Calcium-activated potassium channel slowpoke-like RCK domain	This entry includes calcium-activated potassium channels, known as BK channels or Slowpoke homologues (Slo1-3) which includes calcium-activated potassium channel slowpoke from Drosophila (Slo) and its homologues from vertebrates KCMA1, KCNT1/2 and KC ...	This entry includes calcium-activated potassium channels, known as BK channels or Slowpoke homologues (Slo1-3) which includes calcium-activated potassium channel slowpoke from Drosophila (Slo) and its homologues from vertebrates KCMA1, KCNT1/2 and KCNU1. This entry represents the C-terminal regulator of K+ conductance (RCK) domains which appear as tandem domains in these proteins [1-5]. The RCK domain has a Rossmann-fold topology with unique positions that compose a well-conserved salt bridge and a hydrophobic dimer interface. This domain is also presents in prokaryotic K+ channels.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Calcium-activated potassium channel subunit alpha-1	monoatomic cation transmembrane transporter activity calcium-activated cation channel activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity potassium channel activity monoatomic ion-gated channel activity calcium-activated potassium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity large conductance calcium-activated potassium channel activity monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity monoatomic cation transmembrane transporter activity calcium-activated cation channel activity gated channel activity monoatomic ion channel activity potassium ion transmembrane transporter activity potassium channel activity monoatomic ion-gated channel activity calcium-activated potassium channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity large conductance calcium-activated potassium channel activity monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity ligand-gated monoatomic cation channel activity metal ion transmembrane transporter activity transmembrane transporter activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity voltage-gated potassium channel activity cytoskeletal protein binding actin binding protein binding binding cation binding ion binding metal ion binding small molecule binding identical protein binding	potassium ion homeostasis inorganic ion homeostasis homeostatic process cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis intracellular potassium ion homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis transport monoatomic ion transmembrane transport potassium ion transmembrane transport potassium ion homeostasis inorganic ion homeostasis homeostatic process cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis intracellular potassium ion homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis transport monoatomic ion transmembrane transport potassium ion transmembrane transport establishment of localization metal ion transport monoatomic cation transmembrane transport transmembrane transport localization monoatomic ion transport potassium ion transport cellular process monoatomic cation transport response to stimulus response to metal ion response to chemical response to calcium ion regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process excretion multicellular organismal process micturition renal system process system process smooth muscle contraction involved in micturition urinary bladder smooth muscle contraction muscle contraction muscle system process smooth muscle contraction urinary tract smooth muscle contraction regulation of cellular component size cell volume homeostasis cellular component organization negative regulation of cell volume cellular component organization or biogenesis regulation of biological quality regulation of cell size regulation of anatomical structure size regulation of tube diameter regulation of tube size circulatory system process vascular process in circulatory system blood vessel diameter maintenance vasodilation blood circulation regulation of membrane potential response to decreased oxygen levels response to hypoxia response to stress response to oxygen levels response to abiotic stimulus response to carbon monoxide response to oxygen-containing compound response to osmotic stress	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane apical part of cell apical plasma membrane membrane microdomain membrane raft cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane apical part of cell apical plasma membrane membrane microdomain membrane raft plasma membrane raft caveola voltage-gated potassium channel complex protein-containing complex plasma membrane protein complex potassium channel complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR047871	Calcium-activated potassium channel slowpoke-like	Family
A, B, C, D	IPR003148	Regulator of K+ conductance, N-terminal lobe	Domain
A, B, C, D	IPR005821	Ion transport domain	Domain
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR003929	Calcium-activated potassium channel BK, alpha subunit	Domain
A, B, C, D	IPR048735	Ca2+-activated K+ channel Slowpoke-like, C-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q12791	generalized epilepsy-paroxysmal dyskinesia syndrome status epilepticus renal cell carcinoma obesity disorder pulmonary hypertension Weight Gain chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma hypospadias morbid obesity collecting duct carcinoma papillary renal cell carcinoma intellectual disability sarcoidosis lung cancer generalized epilepsy-paroxysmal dyskinesia syndrome status epilepticus renal cell carcinoma obesity disorder pulmonary hypertension Weight Gain chromophobe renal cell carcinoma sarcomatoid renal cell carcinoma hypospadias morbid obesity collecting duct carcinoma papillary renal cell carcinoma intellectual disability sarcoidosis lung cancer malignant ependymoma astrocytic tumor medulloblastoma non-alcoholic fatty liver disease oligodendroglioma cystic fibrosis pancreatic intraductal papillary-mucinous neoplasm epilepsy genetic endocrine growth disease primitive neuroectodermal tumor renal carcinoma interstitial cystitis lung carcinoma malignant glioma atypical teratoid rhabdoid tumor nasopharyngeal carcinoma clear cell renal carcinoma congenital diaphragmatic hernia pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia glioblastoma psoriasis large cell medulloblastoma malignant colon neoplasm malignant mesothelioma autism breast cancer pancreatic ductal adenocarcinoma endometriosis pilocytic astrocytoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Alpha-helical polytopic	Ion channel (VIC) superfamily	Slo potassium channels

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Potassium, Sodium, & Proton Ion-Selective	Human BK (SLO1) K⁺ channel in total membrane vesicles, Ca²⁺-free and EDTA-free

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.