8GDM

Crystal structure of human cellular retinol binding protein 1 in complex with {[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}(methyl)[1-(thiophen-2-yl)ethyl]amine

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Lipocalins	8062821	3001332	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00061	e8gdmA1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: PF00061	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Retinol-binding protein 1	vitamin binding binding retinal binding isoprenoid binding retinoid binding lipid binding small molecule binding fatty acid binding organic acid binding ion binding anion binding carboxylic acid binding monocarboxylic acid binding all-trans-retinol binding vitamin binding binding retinal binding isoprenoid binding retinoid binding lipid binding small molecule binding fatty acid binding organic acid binding ion binding anion binding carboxylic acid binding monocarboxylic acid binding all-trans-retinol binding alcohol binding retinol binding	organic anion transport carboxylic acid transport transport organic substance transport lipid localization lipid transport establishment of localization organic acid transport localization monocarboxylic acid transport fatty acid transport macromolecule localization chemical homeostasis homeostatic process organic anion transport carboxylic acid transport transport organic substance transport lipid localization lipid transport establishment of localization organic acid transport localization monocarboxylic acid transport fatty acid transport macromolecule localization chemical homeostasis homeostatic process lipid homeostasis diterpenoid metabolic process oxoacid metabolic process cellular biosynthetic process lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process terpenoid biosynthetic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process retinoic acid metabolic process small molecule metabolic process regulation of biological quality monocarboxylic acid biosynthetic process small molecule biosynthetic process isoprenoid biosynthetic process regulation of hormone levels cellular metabolic process biological regulation carboxylic acid metabolic process primary metabolic process hormone metabolic process diterpenoid biosynthetic process retinoic acid biosynthetic process biosynthetic process retinoid metabolic process cellular lipid metabolic process metabolic process cellular process monocarboxylic acid metabolic process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process fat-soluble vitamin metabolic process vitamin A metabolic process vitamin metabolic process	lipid droplet intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen lipid droplet intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000463	Cytosolic fatty-acid binding	Domain
A	IPR031264	Retinol-binding protein 1	Family
A	IPR012674	Calycin	Homologous Superfamily
A	IPR031259	Intracellular lipid binding protein	Family
A	IPR000566	Lipocalin/cytosolic fatty-acid binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P09455	carcinoma Mammary Neoplasms, Experimental sarcomatoid carcinoma lung adenocarcinoma malignant glioma acute myeloid leukemia medulloblastoma astrocytic tumor pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor drug-induced liver injury schizophrenia fetal growth restriction gastric neoplasm carcinoma Mammary Neoplasms, Experimental sarcomatoid carcinoma lung adenocarcinoma malignant glioma acute myeloid leukemia medulloblastoma astrocytic tumor pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor drug-induced liver injury schizophrenia fetal growth restriction gastric neoplasm lung cancer mammary neoplasms, animal osteosarcoma atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma psoriasis ductal breast carcinoma in situ undifferentiated carcinoma glioblastoma hereditary diffuse gastric adenocarcinoma malignant ependymoma malignant pancreatic neoplasm ovarian cancer breast cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer esophageal adenocarcinoma gastric cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.