Annotations: 8GA8

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth B]	PF00850	e8ga8B1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: Arginase/deacetylase	F: PF00850	ECOD (1.6)
H [auth E]	PF00850	e8ga8E1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: Arginase/deacetylase	F: PF00850	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth H]	PF08598	Sds3-like (Sds3)	Sds3-like	-	Family
B [auth A], J [auth D]	PF08295	Sin3 family co-repressor (Sin3_corepress)	Sin3 family co-repressor	This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [1].	Domain
B [auth A], J [auth D]	PF02671	Paired amphipathic helix repeat (PAH)	Paired amphipathic helix repeat	-	Repeat
B [auth A], J [auth D]	PF16879	C-terminal domain of Sin3a protein (Sin3a_C)	C-terminal domain of Sin3a protein	-	Family
C [auth J]	PF13867	Sin3 binding region of histone deacetylase complex subunit SAP30 (SAP30_Sin3_bdg)	Sin3 binding region of histone deacetylase complex subunit SAP30	-	Family
D [auth L]	PF12998	Inhibitor of growth proteins N-terminal histone-binding (ING)	Inhibitor of growth proteins N-terminal histone-binding	-	Coiled-coil
E [auth M]	PF08595	RXT2-like, N-terminal (RXT2_N)	RXT2-like, N-terminal	-	Family
F [auth G]	PF08598	Sds3-like (Sds3)	Sds3-like	-	Family
G [auth B], H [auth E]	PF00850	Histone deacetylase domain (Hist_deacetyl)	Histone deacetylase domain	Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ...	Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1].	Domain
I [auth K]	PF08642	Histone deacetylation protein Rxt3 (Rxt3)	Histone deacetylation protein Rxt3	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H]	Transcriptional regulatory protein SDS3	histone deacetylase binding protein binding binding enzyme binding	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription regulation of growth regulation of growth of unicellular organism as a thread of attached cells growth regulation of filamentous growth of a population of unicellular organisms filamentous growth regulation of invasive growth in response to glucose limitation filamentous growth of a population of unicellular organisms regulation of filamentous growth invasive growth in response to glucose limitation growth of unicellular organism as a thread of attached cells invasive filamentous growth negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process cell adhesion involved in biofilm formation cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms cell-substrate adhesion single-species biofilm formation aggregation of unicellular organisms submerged biofilm formation cell adhesion involved in single-species biofilm formation cell adhesion single-species submerged biofilm formation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen cytoplasm cytosol Rpd3L-Expanded complex Rpd3L complex
B [auth A], J [auth D]	Transcriptional regulatory protein SIN3	transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription corepressor activity identical protein binding protein binding binding	regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process chromatin organization organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process chromatin organization organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization protein-DNA complex organization cellular component organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation protein-containing complex organization epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression cellular process positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation cell division cellular catabolic process catabolic process macroautophagy autophagy nucleophagy process utilizing autophagic mechanism rDNA chromatin condensation chromosome organization chromosome condensation regulation of DNA-templated DNA replication initiation DNA-templated DNA replication DNA replication initiation primary metabolic process DNA metabolic process nucleic acid metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication regulation of DNA-templated DNA replication regulation of nucleobase-containing compound metabolic process regulation of DNA replication regulation of DNA metabolic process cell cycle protein-DNA complex assembly cellular component biogenesis cellular component assembly protein-containing complex assembly nucleosome assembly nucleosome organization RNA metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process transcription by RNA polymerase I regulation of transcription by RNA polymerase I negative regulation of transcription by RNA polymerase I cellular response to stimulus double-strand break repair response to stimulus double-strand break repair via nonhomologous end joining cellular response to stress DNA damage response response to stress DNA repair	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Rpd3L-Expanded complex Rpd3S complex Rpd3L complex
C [auth J]	Transcriptional regulatory protein SAP30	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription positive regulation of invasive growth in response to glucose limitation regulation of growth regulation of growth of unicellular organism as a thread of attached cells growth regulation of filamentous growth of a population of unicellular organisms positive regulation of growth of unicellular organism as a thread of attached cells filamentous growth positive regulation of filamentous growth of a population of unicellular organisms regulation of invasive growth in response to glucose limitation filamentous growth of a population of unicellular organisms positive regulation of growth regulation of filamentous growth invasive growth in response to glucose limitation positive regulation of filamentous growth growth of unicellular organism as a thread of attached cells invasive filamentous growth transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process negative regulation of RNA biosynthetic process transcription by RNA polymerase I negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of transcription by RNA polymerase I negative regulation of RNA metabolic process negative regulation of transcription by RNA polymerase I	membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Sin3-type complex Rpd3L complex
D [auth L]	Transcriptional regulatory protein PHO23	methylated histone binding protein binding binding modification-dependent protein binding histone binding methylation-dependent protein binding cation binding ion binding metal ion binding small molecule binding	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription positive regulation of invasive growth in response to glucose limitation regulation of growth regulation of growth of unicellular organism as a thread of attached cells growth regulation of filamentous growth of a population of unicellular organisms positive regulation of growth of unicellular organism as a thread of attached cells filamentous growth positive regulation of filamentous growth of a population of unicellular organisms regulation of invasive growth in response to glucose limitation filamentous growth of a population of unicellular organisms positive regulation of growth regulation of filamentous growth invasive growth in response to glucose limitation positive regulation of filamentous growth growth of unicellular organism as a thread of attached cells invasive filamentous growth transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process negative regulation of RNA biosynthetic process transcription by RNA polymerase I negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of transcription by RNA polymerase I negative regulation of RNA metabolic process negative regulation of transcription by RNA polymerase I	membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Sin3-type complex Rpd3L complex
E [auth M]	Transcriptional regulatory protein RXT2	-	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation positive regulation of invasive growth in response to glucose limitation regulation of growth regulation of growth of unicellular organism as a thread of attached cells growth regulation of filamentous growth of a population of unicellular organisms positive regulation of growth of unicellular organism as a thread of attached cells filamentous growth positive regulation of filamentous growth of a population of unicellular organisms regulation of invasive growth in response to glucose limitation filamentous growth of a population of unicellular organisms positive regulation of growth regulation of filamentous growth invasive growth in response to glucose limitation positive regulation of filamentous growth growth of unicellular organism as a thread of attached cells invasive filamentous growth RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process sexual reproduction reproductive process conjugation with cellular fusion	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Sin3-type complex Rpd3L complex
F [auth G]	Transcriptional regulatory protein DEP1	histone deacetylase binding protein binding binding enzyme binding	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process regulation of DNA-templated DNA replication initiation DNA-templated DNA replication DNA replication initiation DNA metabolic process DNA replication regulation of DNA-templated DNA replication regulation of DNA replication regulation of DNA metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Rpd3L-Expanded complex cytoplasm Rpd3L complex
G [auth B], H [auth E]	Histone deacetylase RPD3	transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription corepressor activity deacetylase activity histone deacetylase activity protein lysine deacetylase activity catalytic activity, acting on a protein hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity histone modifying activity catalytic activity transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription corepressor activity deacetylase activity histone deacetylase activity protein lysine deacetylase activity catalytic activity, acting on a protein hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity histone modifying activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process chromatin organization organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process regulation of cellular process negative regulation of biological process negative regulation of heterochromatin formation positive regulation of macromolecule biosynthetic process negative regulation of cellular metabolic process positive regulation of metabolic process chromatin organization organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of heterochromatin formation regulation of biological process regulation of chromatin organization negative regulation of cellular component organization cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of cellular component organization cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process negative regulation of chromatin organization protein-DNA complex organization cellular component organization organic substance metabolic process positive regulation of biosynthetic process negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation negative regulation of silent mating-type cassette heterochromatin formation protein-containing complex organization epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of silent mating-type cassette heterochromatin formation negative regulation of biosynthetic process positive regulation of gene expression cellular process positive regulation of cellular biosynthetic process regulation of rDNA heterochromatin formation rDNA heterochromatin formation nucleolus organization nucleolar chromatin organization negative regulation of rDNA heterochromatin formation nucleus organization organelle organization facultative heterochromatin formation cellular catabolic process catabolic process macroautophagy autophagy nucleophagy process utilizing autophagic mechanism rDNA chromatin condensation chromosome organization chromosome condensation regulation of DNA-templated DNA replication initiation DNA-templated DNA replication DNA replication initiation primary metabolic process DNA metabolic process nucleic acid metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication regulation of DNA-templated DNA replication regulation of nucleobase-containing compound metabolic process regulation of DNA replication regulation of DNA metabolic process protein-DNA complex assembly cellular component biogenesis cellular component assembly protein-containing complex assembly nucleosome assembly nucleosome organization regulation of DNA recombination homologous recombination regulation of reproductive process negative regulation of cell cycle negative regulation of nucleobase-containing compound metabolic process cell cycle reciprocal homologous recombination regulation of meiotic cell cycle regulation of cell cycle process DNA recombination meiotic cell cycle regulation of organelle organization negative regulation of DNA recombination reciprocal meiotic recombination meiosis I cell cycle process negative regulation of meiotic cell cycle sexual reproduction negative regulation of reciprocal meiotic recombination reproductive process meiotic cell cycle process meiosis I regulation of reciprocal meiotic recombination meiotic nuclear division regulation of cell cycle negative regulation of meiotic nuclear division cell cycle process organelle fission negative regulation of cell cycle process regulation of meiotic nuclear division nuclear division negative regulation of nuclear division negative regulation of organelle organization negative regulation of reproductive process regulation of nuclear division negative regulation of DNA metabolic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription regulation of autophagy positive regulation of macroautophagy positive regulation of autophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy regulation of cellular catabolic process positive regulation of cellular catabolic process protein localization cellular localization protein localization to nucleolar rDNA repeats localization protein localization to chromosome protein localization to organelle cellular macromolecule localization macromolecule localization transcription elongation by RNA polymerase II transcription by RNA polymerase II DNA-templated transcription elongation regulation of transcription by RNA polymerase II negative regulation of RNA biosynthetic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process response to oxidative stress response to stimulus response to stress positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process transcription by RNA polymerase I regulation of transcription by RNA polymerase I negative regulation of transcription by RNA polymerase I	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure Sin3-type complex nucleus membrane-enclosed lumen nuclear chromosome nuclear protein-containing complex chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Rpd3L-Expanded complex nuclear periphery cytoplasm Snt2C complex Rpd3S complex Rpd3L complex
I [auth K]	Transcriptional regulatory protein RXT3	-	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of biological process negative regulation of cellular metabolic process negative regulation of RNA biosynthetic process transcription by RNA polymerase I negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of transcription by RNA polymerase I negative regulation of metabolic process negative regulation of cellular biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process negative regulation of transcription by RNA polymerase I negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of biosynthetic process	membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle membrane-bounded organelle Rpd3L-Expanded complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen histone deacetylase complex intracellular organelle nucleoplasm non-membrane-bounded organelle catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen Sin3-type complex Rpd3L complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H]	IPR013907	Sds3-like	Family
B [auth A], J [auth D]	IPR039774	Transcriptional regulatory protein Sin3-like	Family
B [auth A], J [auth D]	IPR013194	Histone deacetylase interacting domain	Domain
B [auth A], J [auth D]	IPR003822	Paired amphipathic helix	Repeat
B [auth A], J [auth D]	IPR036600	Paired amphipathic helix superfamily	Homologous Superfamily
B [auth A], J [auth D]	IPR031693	Sin3, C-terminal	Domain
C [auth J]	IPR038291	SAP30, C-terminal domain superfamily	Homologous Superfamily
C [auth J]	IPR025718	Histone deacetylase complex subunit SAP30, Sin3 binding domain	Domain
C [auth J]	IPR024145	Histone deacetylase complex subunit SAP30/SAP30-like	Family
D [auth L]	IPR001965	Zinc finger, PHD-type	Domain
D [auth L]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
D [auth L]	IPR028651	ING family	Family
D [auth L]	IPR019787	Zinc finger, PHD-finger	Domain
D [auth L]	IPR024610	Inhibitor of growth protein, N-terminal histone-binding	Domain
D [auth L]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
D [auth L]	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
E [auth M]	IPR039602	Transcriptional regulatory protein Rxt2	Family
E [auth M]	IPR013904	Transcriptional regulatory protein RXT2, N-terminal	Domain
F [auth G]	IPR013907	Sds3-like	Family
G [auth B], H [auth E]	IPR000286	Histone deacetylase family	Family
G [auth B], H [auth E]	IPR023801	Histone deacetylase domain	Domain
G [auth B], H [auth E]	IPR003084	Histone deacetylase	Family
G [auth B], H [auth E]	IPR037138	Histone deacetylase domain superfamily	Homologous Superfamily
G [auth B], H [auth E]	IPR023696	Ureohydrolase domain superfamily	Homologous Superfamily
I [auth K]	IPR013951	Histone deacetylation protein Rxt3	Family