Annotations: 8G9U

Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	MIF4G	e8g9uA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
C [auth B]	MIF4G	e8g9uB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
E [auth C]	MIF4G	e8g9uC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
F [auth E]	MIF4G	e8g9uE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
G [auth F]	MIF4G	e8g9uF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
N [auth M]	MIF4G	e8g9uM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
D	MIF4G	e8g9uD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
O [auth N]	MIF4G	e8g9uN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth P]	Cas3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity nucleic acid binding hydrolase activity endonuclease activity nuclease activity cation binding metal ion binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
B [auth A], C [auth B], D, E [auth C], F [auth E], B [auth A], C [auth B], D, E [auth C], F [auth E], G [auth F], N [auth M]	CRISPR-associated protein, Csd2 family	-	maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
J [auth H]	CRISPR-associated protein, Csd1 family	-	-	-
M [auth L]	Traget strand DNA (53-MER)	-	-	-
P [auth O]	proximal nontarget strand DNA (5'-D(PAPTPGPAPAPCPTPTPCPAPAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
Q	Distal nontarget DNA (5'-D(PTPTPAPTPAPTPTPAPAPTPAPTPTPAPTPAPTPTPTPA)-3')	-	-	-
O [auth N]	pre-crRNA processing endonuclease	hydrolase activity catalytic activity endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
L [auth K]	crRNA (43-MER)	-	-	-
H [auth I], I [auth G], K [auth J]	Phage associated protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth P]	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A [auth P]	IPR038257	CRISPR-associated Cas3-type HD domain superfamily	Homologous Superfamily
A [auth P]	IPR054712	CRISPR-associated nuclease/helicase Cas3 domain	Domain
A [auth P]	IPR006474	Helicase Cas3, CRISPR-associated, core	Domain
A [auth P]	IPR011545	DEAD/DEAH-box helicase domain	Domain
A [auth P]	IPR006674	HD domain	Domain
A [auth P]	IPR006483	CRISPR-associated Cas3-type, HD domain	Domain
A [auth P]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth A], C [auth B], D, E [auth C], F [auth E], B [auth A], C [auth B], D, E [auth C], F [auth E], G [auth F], N [auth M]	IPR006482	CRISPR-associated protein Cas7, subtype I-B/I-C	Family
B [auth A], C [auth B], D, E [auth C], F [auth E], B [auth A], C [auth B], D, E [auth C], F [auth E], G [auth F], N [auth M]	IPR013418	Type I-C CRISPR-associated protein Cas7/Csd2	Family
J [auth H]	IPR010144	CRISPR-associated protein, Csd1-type	Family
O [auth N]	IPR021124	CRISPR-associated protein, Cas5	Family
O [auth N]	IPR010155	CRISPR pre-crRNA endoribonuclease Cas5d	Family
O [auth N]	IPR013422	CRISPR-associated protein Cas5, N-terminal	Domain
H [auth I], I [auth G], K [auth J]	IPR010144	CRISPR-associated protein, Csd1-type	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8G9U | pdb_00008g9u

Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage