8G9U | pdb_00008g9u

Exploiting Activation and Inactivation Mechanisms in Type I-C CRISPR-Cas3 for Genome Editing Applications


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth N]PF09704CRISPR-associated protein (Cas_Cas5) (Cas_Cas5d)CRISPR-associated protein (Cas_Cas5)- Family
J [auth H]PF09709CRISPR-associated protein (Cas_Csd1) (Cas_Csd1)CRISPR-associated protein (Cas_Csd1)- Family
PF05107CRISPR-associated protein Cas7 (Cas_Cas7)CRISPR-associated protein Cas7- Family
A [auth P]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
A [auth P]PF18019Cas3, HD domain (Cas3_HD)Cas3, HD domainThis HD domain is found at the N-terminus of Cas3 enzymes fused to a helicase domain. This domain is sometimes found as a separate protein. It acts as a nuclease that cleaves ssDNA. Domain
A [auth P]PF22590CRISPR-associated nuclease/helicase Cas3, C-terminal (Cas3-like_C_2)CRISPR-associated nuclease/helicase Cas3, C-terminalThis entry represents the C-terminal domain of CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST from Pseudomonas aeruginosa (Cas3), a DNA-degradation enzyme that forms part of the CRISPR-Cas bacterial immune system. Cas3 contains a Cas2 dom ...This entry represents the C-terminal domain of CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST from Pseudomonas aeruginosa (Cas3), a DNA-degradation enzyme that forms part of the CRISPR-Cas bacterial immune system. Cas3 contains a Cas2 domain, an HD nuclease domain (Pfam:PF18019), RecA1, RecA2, a long linker region, and a C-terminal domain (this entry). This domain contains two alpha-helices and two six-stranded beta-blades [6].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Distal nontarget DNA (5'-D(P*TP*TP*AP*TP*AP*TP*TP*AP*AP*TP*AP*TP*TP*AP*TP*AP*TP*TP*TP*A)-3')---
P [auth O]proximal nontarget strand DNA (5'-D(P*AP*TP*GP*AP*AP*CP*TP*TP*CP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')---
O [auth N]pre-crRNA processing endonuclease -
M [auth L]Traget strand DNA (53-MER)---
L [auth K]crRNA (43-MER)---
J [auth H]CRISPR-associated protein, Csd1 family- - -
H [auth I],
I [auth G],
K [auth J]
Phage associated protein- - -
CRISPR-associated protein, Csd2 family- -
A [auth P]Cas3 -