8G7P

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth j]SCOP2B SuperfamilyRibosomal protein S108106372 3001336 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain8106110 3000053 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S168097402 3000680 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal protein S198094058 3000686 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8107572 3001397 SCOP2B (2022-06-29)
U [auth u]SCOP2B SuperfamilyRibosomal protein S218093436 3002159 SCOP2B (2022-06-29)
CA [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
CA [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
IA [auth J]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8032961 3001186 SCOP2B (2022-06-29)
IA [auth J]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8032963 3000950 SCOP2B (2022-06-29)
JA [auth L]SCOP2B SuperfamilyRibosomal protein L138100808 3001134 SCOP2B (2022-06-29)
KA [auth M]SCOP2B Superfamily50S Ribosomal protein L14-like8106350 3000433 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
PA [auth R]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8106370 3000334 SCOP2B (2022-06-29)
SA [auth U]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
UA [auth W]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8106042 3000334 SCOP2B (2022-06-29)
VA [auth X]SCOP2B SuperfamilyRibosomal protein L25-like8093520 3001161 SCOP2B (2022-06-29)
WA [auth Y]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
XA [auth Z]SCOP2B SuperfamilyL28p-like8106038 3001966 SCOP2B (2022-06-29)
YA [auth 1]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8106142 3000713 SCOP2B (2022-06-29)
AB [auth 3]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2022-06-29)
BB [auth 4]SCOP2B SuperfamilyZn-binding ribosomal proteins8093522 3001320 SCOP2B (2022-06-29)
EB [auth 7]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
FB [auth 8]SCOP2B SuperfamilyRibosomal protein L368093434 3001346 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S68107228 3001323 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S88106144 3000709 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S Ribosomal RNA---
J [auth j]30S ribosomal protein S10
K [auth k]30S ribosomal protein S11
L [auth l]30S ribosomal protein S12
M [auth m]30S ribosomal protein S13
N [auth n]30S ribosomal protein S14---
O [auth o]30S ribosomal protein S15---
P [auth p]30S ribosomal protein S16
Q [auth q]30S ribosomal protein S17---
R [auth r]30S ribosomal protein S18
S [auth s]30S ribosomal protein S19---
B [auth b]30S ribosomal protein S2
T [auth t]30S ribosomal protein S20
U [auth u]30S ribosomal protein S21
V [auth w],
X [auth y]
Isoleucine tRNA---
W [auth x]P-site initiator tRNA---
Y [auth v]M-I mRNA---
Z [auth z]Elongation factor Tu -
AA [auth A]23S Ribosomal RNA---
BA [auth B]5S Ribosomal RNA---
CA [auth C]50S ribosomal protein L2
DA [auth D]50S ribosomal protein L3---
C [auth c]30S ribosomal protein S3
EA [auth E]50S ribosomal protein L4
FA [auth F]50S ribosomal protein L5---
GA [auth G]50S ribosomal protein L6
HA [auth H]50S ribosomal protein L9---
IA [auth J]50S ribosomal protein L11
JA [auth L]50S ribosomal protein L13---
KA [auth M]50S ribosomal protein L14
LA [auth N]50S ribosomal protein L15---
MA [auth O]50S ribosomal protein L16
NA [auth P]50S ribosomal protein L17---
D [auth d]30S ribosomal protein S4
OA [auth Q]50S ribosomal protein L18---
PA [auth R]50S ribosomal protein L19
QA [auth S]50S ribosomal protein L20
RA [auth T]Ribosomal protein L21---
SA [auth U]50S ribosomal protein L22
TA [auth V]50S ribosomal protein L23---
UA [auth W]50S ribosomal protein L24---
VA [auth X]50S ribosomal protein L25---
WA [auth Y]50S ribosomal protein L27
XA [auth Z]50S ribosomal protein L28
E [auth e]30S ribosomal protein S5
YA [auth 1]50S ribosomal protein L29
ZA [auth 2]50S ribosomal protein L30---
AB [auth 3]50S ribosomal protein L31
BB [auth 4]50S ribosomal protein L32---
CB [auth 5]50S ribosomal protein L33---
DB [auth 6]50S ribosomal protein L34
EB [auth 7]50S ribosomal protein L35
FB [auth 8]50S ribosomal protein L36
F [auth f]30S ribosomal protein S6
G [auth g]30S ribosomal protein S7
H [auth h]30S ribosomal protein S8---
I [auth i]30S ribosomal protein S9---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth j]IPR001848Small ribosomal subunit protein uS10Family
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
U [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth u]IPR001911Small ribosomal subunit protein bS21Family
Z [auth z]IPR000795Translational (tr)-type GTP-binding domainDomain
Z [auth z]IPR033720Elongation factor Tu, domain 2Domain
Z [auth z]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
Z [auth z]IPR031157Tr-type G domain, conserved siteConserved Site
Z [auth z]IPR004541Translation elongation factor EFTu/EF1A, bacterial/organelleFamily
Z [auth z]IPR004161Translation elongation factor EFTu-like, domain 2Domain
Z [auth z]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Z [auth z]IPR004160Translation elongation factor EFTu/EF1A, C-terminalDomain
Z [auth z]IPR005225Small GTP-binding protein domainDomain
Z [auth z]IPR041709Elongation factor Tu (EF-Tu), GTP-binding domainDomain
Z [auth z]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CA [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
CA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth C]IPR002171Large ribosomal subunit protein uL2Family
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
EA [auth E]IPR002136Large ribosomal subunit protein uL4Family
EA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
GA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
GA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
GA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
GA [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
GA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IA [auth J]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
IA [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
IA [auth J]IPR000911Ribosomal protein uL11Family
IA [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
IA [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
IA [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
IA [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
KA [auth M]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
KA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
KA [auth M]IPR000218Large ribosomal subunit protein uL14Family
KA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
MA [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
MA [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
MA [auth O]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
MA [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
MA [auth O]IPR047873Large ribosomal subunit protein uL16Family
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
PA [auth R]IPR001857Large ribosomal subunit protein bL19Family
PA [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
PA [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
PA [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
QA [auth S]IPR005813Large ribosomal subunit protein bL20Family
SA [auth U]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
SA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
SA [auth U]IPR001063Large ribosomal subunit protein uL22Family
SA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
SA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
WA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
WA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
XA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
XA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
XA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
XA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
YA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
YA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
YA [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
AB [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
AB [auth 3]IPR027491Large ribosomal subunit protein bL31 type AFamily
AB [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AB [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
DB [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
DB [auth 6]IPR000271Large ribosomal subunit protein bL34Family
EB [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
EB [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
EB [auth 7]IPR001706Large ribosomal subunit protein bL35Family
EB [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
FB [auth 8]IPR000473Large ribosomal subunit protein bL36Family
FB [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth a]2MG Parent Component: G

A [auth a]4OC Parent Component: C

A [auth a]5MC Parent Component: C

A [auth a]G7M Parent Component: G

A [auth a]MA6 Parent Component: A

A [auth a]PSU Parent Component: U

A [auth a]UR3 Parent Component: U

K [auth k]IAS
L [auth l]D2T Parent Component: ASP

V [auth w],
X [auth y]
3AU Parent Component: U

V [auth w],
X [auth y]
4SU Parent Component: U

V [auth w],
X [auth y]
5MU Parent Component: U

V [auth w],
X [auth y]
G7M Parent Component: G

V [auth w],
X [auth y]
H2U Parent Component: U

V [auth w],
X [auth y]
M3X Parent Component: C

V [auth w],
X [auth y]
OMG Parent Component: G

V [auth w],
X [auth y]
PSU Parent Component: U

V [auth w],
X [auth y]
T6A Parent Component: A

W [auth x]4SU Parent Component: U

W [auth x]5MC Parent Component: C

W [auth x]5MU Parent Component: U

W [auth x]PSU Parent Component: U

AA [auth A]1MG Parent Component: G

AA [auth A]2MA Parent Component: A

AA [auth A]2MG Parent Component: G

AA [auth A]3TD Parent Component: U

AA [auth A]5MC Parent Component: C

AA [auth A]5MU Parent Component: U

AA [auth A]6MZ Parent Component: A

AA [auth A]G7M Parent Component: G

AA [auth A]H2U Parent Component: U

AA [auth A]OMC Parent Component: C

AA [auth A]OMG Parent Component: G

AA [auth A]OMU Parent Component: U

AA [auth A]PSU Parent Component: U

DA [auth D]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
MA [auth O]4D4 Parent Component: ARG

RESIDAA0071

MA [auth O]MS6 RESIDAA0071