8G4K | pdb_00008g4k

Complex of TbRII mini protein binder bound to the TbRII ECD

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Snake toxin-like	8038457	3000545	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Integrin_A_Ig_3	e8g4kB01	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Integrin_A_Ig_3	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF08917	Transforming growth factor beta receptor 2 ectodomain (ecTbetaR2)	Transforming growth factor beta receptor 2 ectodomain	The Transforming growth factor beta receptor 2 ectodomain is a compact fold consisting of nine beta-strands and a single helix stabilised by a network of six intra strand disulphide bonds. The folding topology includes a central five-stranded antipar ...	The Transforming growth factor beta receptor 2 ectodomain is a compact fold consisting of nine beta-strands and a single helix stabilised by a network of six intra strand disulphide bonds. The folding topology includes a central five-stranded antiparallel beta-sheet, eight-residues long at its centre, covered by a second layer consisting of two segments of two-stranded antiparallel beta-sheets (beta1-beta4, beta3-beta9) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	TGF-beta receptor type-2	protein serine/threonine kinase activity molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups transmembrane receptor protein serine/threonine kinase activity transforming growth factor beta receptor activity, type II transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity protein serine/threonine kinase activity molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups transmembrane receptor protein serine/threonine kinase activity transforming growth factor beta receptor activity, type II transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity transforming growth factor beta receptor activity transforming growth factor beta receptor binding protein binding binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding transforming growth factor beta binding growth factor binding cytokine binding SMAD binding activin receptor activity activin receptor activity, type I protein-containing complex binding activin binding enzyme regulator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity kinase regulator activity molecular adaptor activity type III transforming growth factor beta receptor binding glycosaminoglycan binding	cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction enzyme-linked receptor protein signaling pathway positive regulation of cellular process regulation of biological process regulation of signaling cell surface receptor signaling pathway biological regulation positive regulation of intracellular signal transduction positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway SMAD protein signal transduction regulation of response to stimulus regulation of cell communication cellular process regulation of SMAD protein signal transduction positive regulation of SMAD protein signal transduction positive regulation of signaling response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cardiac chamber morphogenesis heart morphogenesis ventricular septum development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development animal organ morphogenesis cardiac ventricle development sensory organ development eye development visual system development camera-type eye development sensory system development lens development in camera-type eye apoptotic process cell death programmed cell death blood vessel morphogenesis tube development artery development vasculature development tube morphogenesis artery morphogenesis blood vessel development outflow tract septum morphogenesis outflow tract morphogenesis cellular developmental process hemopoiesis cell development embryo development embryonic hemopoiesis cell differentiation embryonic organ development branching morphogenesis of an epithelial tube angiogenesis epithelial tube morphogenesis epithelium development morphogenesis of an epithelium tissue development branching involved in blood vessel morphogenesis tissue morphogenesis morphogenesis of a branching structure anatomical structure formation involved in morphogenesis morphogenesis of a branching epithelium nervous system development positive regulation of cell population proliferation regulation of leukocyte activation regulation of alpha-beta T cell activation positive regulation of alpha-beta T cell proliferation regulation of cell activation positive regulation of CD4-positive, alpha-beta T cell proliferation positive regulation of cell activation T cell activation alpha-beta T cell proliferation lymphocyte proliferation positive regulation of leukocyte activation alpha-beta T cell activation regulation of immune system process positive regulation of immune system process regulation of leukocyte proliferation cell population proliferation positive regulation of T cell activation regulation of CD4-positive, alpha-beta T cell proliferation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of alpha-beta T cell activation regulation of cell population proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of multicellular organismal process positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion regulation of alpha-beta T cell proliferation positive regulation of lymphocyte activation positive regulation of CD4-positive, alpha-beta T cell activation cell adhesion cell-cell adhesion CD4-positive, alpha-beta T cell activation positive regulation of mononuclear cell proliferation regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation CD4-positive, alpha-beta T cell proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation regulation of CD4-positive, alpha-beta T cell activation immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation immune system development regulation of B cell tolerance induction B cell tolerance induction positive regulation of B cell tolerance induction regulation of tolerance induction positive regulation of tolerance induction tolerance induction Notch signaling pathway cellular response to growth factor stimulus cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway lung lobe morphogenesis respiratory tube development lung lobe development lung development respiratory system development lung morphogenesis regulation of epithelial to mesenchymal transition regulation of developmental process positive regulation of epithelial to mesenchymal transition regulation of cell differentiation mesenchyme development positive regulation of developmental process positive regulation of cell differentiation epithelial to mesenchymal transition mesenchymal cell differentiation activin receptor signaling pathway positive regulation of mesenchymal cell proliferation regulation of mesenchymal cell proliferation mesenchymal cell proliferation reactive oxygen species metabolic process positive regulation of reactive oxygen species metabolic process positive regulation of metabolic process metabolic process regulation of metabolic process regulation of reactive oxygen species metabolic process heart valve development aortic valve development heart valve morphogenesis semi-lunar valve development aortic valve morphogenesis positive regulation of cardiac epithelial to mesenchymal transition positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation endocardial cushion morphogenesis endocardial cushion development cardiac epithelial to mesenchymal transition epithelial to mesenchymal transition involved in endocardial cushion formation regulation of cardiac epithelial to mesenchymal transition mesenchyme morphogenesis endocardial cushion formation regulation of epithelial to mesenchymal transition involved in endocardial cushion formation RNA transport nitrogen compound transport transport nucleic acid transport establishment of localization localization establishment of RNA localization miRNA transport macromolecule localization RNA localization nucleobase-containing compound transport myeloid leukocyte differentiation myeloid dendritic cell activation Langerhans cell differentiation mononuclear cell differentiation myeloid leukocyte activation myeloid cell differentiation myeloid dendritic cell differentiation dendritic cell differentiation leukocyte differentiation vasculogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration positive regulation of cell motility regulation of cell migration cell migration epithelial cell migration cell motility regulation of epithelial cell migration locomotion epithelium migration regulation of locomotion head development central nervous system development brain development stem cell differentiation regulation of stem cell differentiation regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process response to sterol response to lipid response to alcohol response to oxygen-containing compound response to cholesterol membranous septum morphogenesis bronchus development bronchus morphogenesis epithelial cell apoptotic process lens fiber cell apoptotic process embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development secondary palate development roof of mouth development inferior endocardial cushion morphogenesis pattern specification process embryonic heart tube development embryonic heart tube morphogenesis heart looping determination of bilateral symmetry determination of left/right symmetry specification of symmetry embryonic organ morphogenesis embryonic morphogenesis determination of heart left/right asymmetry regionalization left/right pattern formation endocardial cushion fusion cell adhesion involved in heart morphogenesis smoothened signaling pathway aorta morphogenesis aorta development embryonic cranial skeleton morphogenesis skeletal system development cranial skeletal system development embryonic skeletal system development skeletal system morphogenesis embryonic skeletal system morphogenesis gastrulation atrioventricular valve development tricuspid valve development tricuspid valve morphogenesis atrioventricular valve morphogenesis trachea morphogenesis trachea formation trachea development animal organ formation T cell tolerance induction positive regulation of T cell tolerance induction regulation of T cell tolerance induction regulation of tolerance induction to self antigen tolerance induction to self antigen positive regulation of tolerance induction to self antigen connective tissue development developmental growth endochondral bone morphogenesis organ growth cell growth growth plate cartilage chondrocyte development chondrocyte differentiation involved in endochondral bone morphogenesis growth plate cartilage development endochondral bone growth growth plate cartilage chondrocyte growth bone development developmental cell growth chondrocyte hypertrophy growth chondrocyte development involved in endochondral bone morphogenesis developmental growth involved in morphogenesis growth plate cartilage chondrocyte differentiation bone growth chondrocyte differentiation cartilage development involved in endochondral bone morphogenesis bone morphogenesis chondrocyte development cartilage development regulation of stem cell proliferation stem cell proliferation cardiac ventricle morphogenesis cardiac left ventricle morphogenesis gland morphogenesis mammary gland morphogenesis mammary gland development gland development regulation of vasculature development regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis regulation of leukocyte differentiation lymphocyte differentiation positive regulation of T cell differentiation regulation of cell development T cell differentiation positive regulation of cell development positive regulation of alpha-beta T cell differentiation positive regulation of NK T cell differentiation regulation of alpha-beta T cell differentiation regulation of T cell differentiation alpha-beta T cell differentiation positive regulation of hemopoiesis NK T cell differentiation regulation of lymphocyte differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation regulation of NK T cell differentiation positive regulation of lymphocyte differentiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex signaling receptor complex membrane microdomain cell periphery membrane raft plasma membrane raft membrane plasma membrane plasma membrane region caveola cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex signaling receptor complex membrane microdomain cell periphery membrane raft plasma membrane raft membrane plasma membrane plasma membrane region caveola extracellular region catalytic complex plasma membrane protein complex membrane protein complex transferase complex protein kinase complex transferase complex, transferring phosphorus-containing groups serine/threonine protein kinase complex transforming growth factor beta ligand-receptor complex plasma membrane signaling receptor complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen cell surface external side of plasma membrane side of membrane activin receptor complex
A	5HCS_TGFBR2_1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR000719	Protein kinase domain	Domain
B	IPR017441	Protein kinase, ATP binding site	Binding Site
B	IPR015013	Transforming growth factor beta receptor 2 ectodomain	Domain
B	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
B	IPR008271	Serine/threonine-protein kinase, active site	Active Site
B	IPR000333	Ser/Thr protein kinase, TGFB receptor	Family
B	IPR017194	Transforming growth factor-beta receptor, type II	Family
B	IPR045860	Snake toxin-like superfamily	Homologous Superfamily
B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P37173	Loeys-Dietz syndrome thoracic aortic aneurysm Lynch syndrome aortic aneurysm Marfan syndrome colorectal cancer, hereditary nonpolyposis, type 6 Loeys-Dietz syndrome 2 esophageal cancer Aneurysm, Dissecting gastrointestinal stromal tumor bone disease sarcomatoid carcinoma carcinoma craniosynostosis malignant colon neoplasm Loeys-Dietz syndrome thoracic aortic aneurysm Lynch syndrome aortic aneurysm Marfan syndrome colorectal cancer, hereditary nonpolyposis, type 6 Loeys-Dietz syndrome 2 esophageal cancer Aneurysm, Dissecting gastrointestinal stromal tumor bone disease sarcomatoid carcinoma carcinoma craniosynostosis malignant colon neoplasm breast carcinoma prostate cancer familial thoracic aortic aneurysm and aortic dissection malignant ependymoma cancer ulcerative colitis chronic obstructive pulmonary disease medulloblastoma colorectal cancer invasive ductal breast carcinoma dermatomyositis limb-girdle muscular dystrophy arthrogryposis nephrosclerosis ductal breast carcinoma in situ osteosarcoma lung benign neoplasm pilocytic astrocytoma esophagus carcinoma in situ brain cancer breast cancer gastric adenocarcinoma malignant glioma undifferentiated carcinoma Gaucher disease cerebrovascular disorder colon carcinoma diabetic kidney disease juvenile dermatomyositis neoplasm of esophagus Becker muscular dystrophy Ehlers-Danlos syndrome benign neoplasm of esophagus ovarian cancer lung cancer bone fracture lymphoplasmacytic lymphoma schizophrenia malignant mesothelioma carcinoma of esophagus glioblastoma MALT lymphoma colonic neoplasm adrenal cortex carcinoma migraine disorder intellectual disability myopathy cystic fibrosis Duchenne muscular dystrophy benign colon neoplasm non-small cell lung carcinoma Emery-Dreifuss muscular dystrophy lung adenocarcinoma bone cancer pancreatic ductal adenocarcinoma esophageal squamous cell carcinoma lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.