Cryo-EM structure of DDB1deltaB-DDA1-DCAF16-BRD4(BD2)-MMH2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Bromodomain | e8g46C1 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
| A | CPSF_A_N | e8g46A3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
| A | MMS1_N_N | e8g46A1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
| A | CPSF_A_C | e8g46A2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth E] | PF10172 | Det1 complexing ubiquitin ligase (DDA1) | Det1 complexing ubiquitin ligase | - | Family |
| PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain | |
| PF10433 | RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st) | RSE1/DDB1/CPSF1 first beta-propeller | - | Repeat | |
| PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| D [auth E] | IPR018276 | DET1- and DDB1-associated protein 1 domain | Domain |
| D [auth E] | IPR033575 | DET1- and DDB1-associated protein 1-like | Family |
| IPR043508 | Brdt, bromodomain, repeat I | Domain | |
| IPR027353 | NET domain | Domain | |
| IPR043509 | Brdt, bromodomain, repeat II | Domain | |
| IPR018359 | Bromodomain, conserved site | Conserved Site | |
| IPR001487 | Bromodomain | Domain | |
| IPR050935 | Bromodomain-containing chromatin reader | Family | |
| IPR038336 | NET domain superfamily | Homologous Superfamily | |
| IPR031354 | Bromodomain protein 4, C-terminal | Domain | |
| IPR036427 | Bromodomain-like superfamily | Homologous Superfamily | |
| IPR028216 | DDB1- and CUL4-associated factor 16 | Family | |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
| IPR004871 | RSE1/DDB1/CPSF1, C-terminal | Domain | |
| IPR050358 | RSE1/DDB1/CPSF1 | Family | |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
| IPR018846 | RSE1/DDB1/CPSF1, first beta-propeller | Domain |














