Annotations: 8G01

YES Complex - E. coli MraY, Protein E ID21, E. coli SlyD

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RIIa	e8g01A1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RIIa	ECOD (v294.1)
D [auth E]	Glyco_hydro_43	e8g01E1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
E [auth D]	RIIa	e8g01D1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RIIa	ECOD (v294.1)
F [auth C]	Glyco_hydro_43	e8g01C1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth E]	PF00953	Glycosyl transferase family 4 (Glycos_transf_4)	Glycosyl transferase family 4	-	Family
A, D [auth E]	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 (MraY_sig1)	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1	-	Motif
E [auth D], F [auth C]	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth E]	Phospho-N-acetylmuramoyl-pentapeptide-transferase	transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity cation binding ion binding binding metal ion binding small molecule binding	developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular process cell division cellular component organization developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular process cell division cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process metabolic process macromolecule metabolic process cell wall macromolecule metabolic process carbohydrate derivative biosynthetic process peptidoglycan-based cell wall biogenesis glycosaminoglycan metabolic process carbohydrate derivative metabolic process peptidoglycan biosynthetic process aminoglycan metabolic process peptidoglycan metabolic process aminoglycan biosynthetic process glycosaminoglycan biosynthetic process	cellular anatomical structure membrane cell periphery plasma membrane
B, C [auth G]	GPE	enzyme regulator activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity	biological process involved in interspecies interaction between organisms cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	-
E [auth D], F [auth C]	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding nickel cation binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity unfolded protein binding cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding nickel cation binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity unfolded protein binding protein binding copper ion binding zinc ion binding	protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of protein stability biological regulation regulation of biological quality protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of protein stability biological regulation regulation of biological quality protein stabilization response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth E]	IPR018480	Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site	Conserved Site
A, D [auth E]	IPR003524	Phospho-N-acetylmuramoyl-pentapeptide transferase	Family
A, D [auth E]	IPR000715	Glycosyl transferase, family 4	Family
B, C [auth G]	IPR007605	Microvirus lysis protein (E)	Family
E [auth D], F [auth C]	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
E [auth D], F [auth C]	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain
E [auth D], F [auth C]	IPR048261	PPIase chaperone SlpA/SlyD-like, insertion domain superfamily	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C [auth G], D [auth E]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C [auth G], D [auth E]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C [auth G], D [auth E]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	PNPT Superfamily	MraY-Protein E_ID21-SlyD "YES_ID21" complex

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.