8FUD | pdb_00008fud

Crystal structure of Vps29 in complex with Chaetomium thermophilum Vps5 (71 to 80)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Metallo-dependent phosphatases	8035118	3001067	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Metallo-dependent phosphatases	8035118	3001067	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e8fudA01	A: Rossmann-like	X: Rossmann-related	H: FAD/NAD(P)-binding domain	T: 7tm_1	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12850	Calcineurin-like phosphoesterase superfamily domain (Metallophos_2)	Calcineurin-like phosphoesterase superfamily domain	Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Putative vacuolar protein sorting-associated protein	binding phospholipid binding lipid binding phosphatidylinositol binding identical protein binding protein binding	cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process establishment of protein localization protein transport macromolecule localization cellular localization transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport localization cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular process establishment of protein localization protein transport macromolecule localization intracellular protein localization maintenance of protein location protein localization to Golgi apparatus maintenance of location maintenance of location in cell maintenance of protein location in cell protein localization to organelle protein retention in Golgi apparatus	protein-containing complex cellular anatomical structure membrane membrane protein complex retromer complex endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endosome protein-containing complex cellular anatomical structure membrane membrane protein complex retromer complex endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endosome intracellular vesicle cytoplasmic vesicle vesicle cytosol
A, B	Vacuolar protein sorting-associated protein 29	cation binding ion binding binding metal ion binding small molecule binding	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport post-Golgi vesicle-mediated transport vesicle-mediated transport cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport post-Golgi vesicle-mediated transport vesicle-mediated transport Golgi to vacuole transport vacuolar transport Golgi vesicle transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane	protein-containing complex cellular anatomical structure membrane membrane protein complex retromer complex endomembrane system retromer, cargo-selective complex membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle protein-containing complex cellular anatomical structure membrane membrane protein complex retromer complex endomembrane system retromer, cargo-selective complex membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle cytosol endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR001683	Phox homology	Domain
C, D	IPR036871	PX domain superfamily	Homologous Superfamily
C, D	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
C, D	IPR015404	Sorting nexin/Vps5-like, C-terminal	Domain
C, D	IPR035803	Sorting nexin Vps5, BAR domain	Domain
A, B	IPR000979	Phosphodiesterase MJ0936/Vps29	Family
A, B	IPR024654	Calcineurin-like phosphoesterase domain, lpxH-type	Domain
A, B	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
A, B	IPR028661	Vacuolar protein sorting-associated protein 29	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.