8FN9 | pdb_00008fn9

Crystal structure of the C-terminal Fg domain of TNR with the single FN domain of PTPRZ

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Glyco_hydro_43	e8fn9B1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
D	Glyco_hydro_43	e8fn9D1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
F	V-set	e8fn9F1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: V-set	ECOD (v294.1)
H	Glyco_hydro_43	e8fn9H1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
A	V-set	e8fn9A1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: V-set	ECOD (v294.1)
C	Glyco_hydro_43	e8fn9C1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
E	Glyco_hydro_43	e8fn9E1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
G	Glyco_hydro_43	e8fn9G1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.215.10	Alpha Beta	Alpha-Beta Complex	Gamma Fibrinogen	Chain A, domain 1	CATH (utative)
C	3.90.215.10	Alpha Beta	Alpha-Beta Complex	Gamma Fibrinogen	Chain A, domain 1	CATH (utative)
E	3.90.215.10	Alpha Beta	Alpha-Beta Complex	Gamma Fibrinogen	Chain A, domain 1	CATH (utative)
G	3.90.215.10	Alpha Beta	Alpha-Beta Complex	Gamma Fibrinogen	Chain A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain
A, C, E, G	PF00147	Fibrinogen beta and gamma chains, C-terminal globular domain (Fibrinogen_C)	Fibrinogen beta and gamma chains, C-terminal globular domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H	Receptor-type tyrosine-protein phosphatase zeta	phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity cell adhesion molecule binding phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding	developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of cellular process regulation of developmental process regulation of myelination biological regulation nervous system development regulation of nervous system development myelination multicellular organism development axon ensheathment ensheathment of neurons anatomical structure development developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of cellular process regulation of developmental process regulation of myelination biological regulation nervous system development regulation of nervous system development myelination multicellular organism development axon ensheathment ensheathment of neurons anatomical structure development cellular process regulation of multicellular organismal process system development central nervous system development cellular developmental process neurogenesis gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process oligodendrocyte progenitor proliferation cell population proliferation regulation of cell population proliferation neural precursor cell proliferation regulation of oligodendrocyte progenitor proliferation regulation of neural precursor cell proliferation neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process cellular response to stimulus response to stimulus signaling signal transduction cell communication axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis plasma membrane bounded cell projection organization axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development behavior system process learning or memory nervous system process cognition peptidyl-tyrosine dephosphorylation positive regulation of nervous system development positive regulation of biological process regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis positive regulation of gliogenesis regulation of cell development positive regulation of developmental process positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of cellular process positive regulation of oligodendrocyte differentiation positive regulation of cell development regulation of glial cell differentiation positive regulation of glial cell differentiation positive regulation of multicellular organismal process regulation of oligodendrocyte differentiation hemopoiesis hematopoietic progenitor cell differentiation	cell periphery cellular anatomical structure plasma membrane membrane perisynaptic extracellular matrix extracellular matrix synapse-associated extracellular matrix external encapsulating structure extracellular region perineuronal net specialized extracellular matrix synapse cell junction
A, C, E, G	Tenascin-R	-	regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process positive regulation of cell communication multicellular organismal process system process nervous system process regulation of system process positive regulation of biological process positive regulation of transmission of nerve impulse transmission of nerve impulse regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process positive regulation of cell communication multicellular organismal process system process nervous system process regulation of system process positive regulation of biological process positive regulation of transmission of nerve impulse transmission of nerve impulse regulation of nervous system process cell communication regulation of transmission of nerve impulse positive regulation of nervous system process positive regulation of multicellular organismal process regulation of cell communication regulation of multicellular organismal process positive regulation of cellular process signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic regulation of synaptic transmission, glutamatergic synaptic signaling trans-synaptic signaling regulation of signaling positive regulation of synaptic transmission cell-cell signaling positive regulation of synaptic transmission, glutamatergic chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling positive regulation of signaling cellular response to stimulus response to stimulus developmental growth cell projection organization regulation of cellular response to stress neuron projection development regulation of cell development multicellular organism development cell projection morphogenesis neuron differentiation cell differentiation sprouting of injured axon regulation of biological quality system development regulation of sprouting of injured axon regulation of cell projection organization response to external stimulus generation of neurons negative regulation of axonogenesis negative regulation of developmental growth regulation of response to stimulus negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process regulation of response to external stimulus plasma membrane bounded cell projection morphogenesis cell development cell growth response to axon injury regulation of response to wounding neurogenesis negative regulation of neurogenesis regulation of extent of cell growth axon regeneration regulation of response to stress negative regulation of nervous system development negative regulation of cell differentiation regulation of anatomical structure morphogenesis negative regulation of axon extension involved in regeneration neuron projection extension regulation of developmental growth developmental cell growth negative regulation of developmental process growth negative regulation of sprouting of injured axon negative regulation of axon extension axon development regulation of cell growth cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis negative regulation of cell development neuron development axon extension involved in regeneration axon extension regulation of growth axonogenesis regulation of cellular component size negative regulation of biological process negative regulation of neuron projection regeneration regulation of cell differentiation regulation of neurogenesis regeneration neuron projection regeneration negative regulation of growth neuron projection morphogenesis anatomical structure development response to wounding developmental process regulation of axon regeneration negative regulation of cellular component organization negative regulation of cell growth nervous system development developmental growth involved in morphogenesis negative regulation of response to external stimulus regulation of neuron projection regeneration negative regulation of axon regeneration cellular developmental process cell morphogenesis regulation of axon extension cellular component organization regulation of nervous system development cellular response to stress regulation of axonogenesis response to stress negative regulation of cellular process cellular component organization or biogenesis negative regulation of cell projection organization regulation of cell size regulation of multicellular organismal development plasma membrane bounded cell projection organization negative regulation of response to stimulus negative regulation of response to wounding negative regulation of neuron projection development regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size head development forebrain development animal organ development brain development telencephalon cell migration central nervous system development forebrain cell migration cell migration telencephalon development cell motility extracellular matrix organization extracellular structure organization external encapsulating structure organization neuromuscular process neuromuscular process controlling balance cell junction organization synapse organization regulation of cell motility regulation of locomotion regulation of cell migration locomotion behavior locomotory behavior exploration behavior locomotory exploration behavior negative regulation of cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion regulation of cell-cell adhesion neuron cell-cell adhesion axon guidance neuron projection guidance negative regulation of signaling negative regulation of synaptic transmission negative regulation of cell communication learning learning or memory cognition associative learning neuroblast migration long-term synaptic potentiation regulation of synaptic plasticity	cell surface cellular anatomical structure solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region external encapsulating structure protein complex involved in cell-matrix adhesion extracellular protein-containing complex tenascin complex protein complex involved in cell adhesion interstitial matrix non-collagenous component of interstitial matrix membrane microdomain cell surface cellular anatomical structure solid phase of interstitial matrix protein-containing complex extracellular matrix extracellular region external encapsulating structure protein complex involved in cell-matrix adhesion extracellular protein-containing complex tenascin complex protein complex involved in cell adhesion interstitial matrix non-collagenous component of interstitial matrix membrane microdomain membrane raft membrane synapse cell junction glutamatergic synapse perisynaptic extracellular matrix synapse-associated extracellular matrix perineuronal net specialized extracellular matrix Schaffer collateral - CA1 synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H	IPR001148	Alpha carbonic anhydrase domain	Domain
B, D, F, H	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
B, D, F, H	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
B, D, F, H	IPR041887	Receptor-type tyrosine-protein phosphatase, carbonic anhydrase domain	Domain
B, D, F, H	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
B, D, F, H	IPR003961	Fibronectin type III	Domain
B, D, F, H	IPR036398	Alpha carbonic anhydrase domain superfamily	Homologous Superfamily
B, D, F, H	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
B, D, F, H	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
B, D, F, H	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, D, F, H	IPR050348	Protein-Tyrosine Phosphatase	Family
B, D, F, H	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
A, C, E, G	IPR014716	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Homologous Superfamily
A, C, E, G	IPR000742	EGF-like domain	Domain
A, C, E, G	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Domain
A, C, E, G	IPR003961	Fibronectin type III	Domain
A, C, E, G	IPR050991	Extracellular Matrix Regulatory Proteins	Family
A, C, E, G	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C, E, G	IPR036056	Fibrinogen-like, C-terminal	Homologous Superfamily
A, C, E, G	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D, F, H	Pharos: P23471	bagassosis pneumoconiosis pilocytic astrocytoma schizophrenia astrocytic tumor breast carcinoma glioblastoma Helicobacter pylori infectious disease malignant colon neoplasm nasopharyngeal carcinoma ovarian cancer pituitary cancer cystic fibrosis Helicobacter Infections interstitial cystitis bagassosis pneumoconiosis pilocytic astrocytoma schizophrenia astrocytic tumor breast carcinoma glioblastoma Helicobacter pylori infectious disease malignant colon neoplasm nasopharyngeal carcinoma ovarian cancer pituitary cancer cystic fibrosis Helicobacter Infections interstitial cystitis malignant glioma non-small cell lung carcinoma ovarian carcinoma breast cancer esophageal adenocarcinoma Helicobacter pylori infection, susceptibility to large cell medulloblastoma medulloblastoma oligodendroglioma
A, C, E, G	Pharos: Q92752	Gliosis attention deficit hyperactivity disorder, inattentive type lung carcinoma medulloblastoma pilocytic astrocytoma wet macular degeneration atypical teratoid rhabdoid tumor large cell medulloblastoma malignant ependymoma non-small cell lung carcinoma primitive neuroectodermal tumor glioblastoma lung adenocarcinoma malignant glioma oligodendroglioma