8FN2

The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth K]PF00298e8fn2K1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
K [auth L]PF00572e8fn2L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
L [auth M]PF00238e8fn2M1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
M [auth N]PF00828e8fn2N1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
N [auth O]PF00252e8fn2O1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
O [auth P]PF01196e8fn2P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
P [auth Q]PF00861e8fn2Q1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
Q [auth R]PF01245e8fn2R1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
R [auth S]PF00453e8fn2S1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
S [auth T]PF00829e8fn2T1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
T [auth U]PF00237e8fn2U1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
U [auth V]PF00276e8fn2V1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
V [auth W]PF00467,PF17136e8fn2W1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
W [auth X]PF01386e8fn2X1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
W [auth X]PF14693e8fn2X2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
X [auth Y]PF01016e8fn2Y1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
Y [auth Z]PF00830e8fn2Z1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
Z [auth a]PF00831e8fn2a1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
AA [auth b]PF00327e8fn2b1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
BA [auth c]PF01197e8fn2c1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
CA [auth d]PF01783e8fn2d1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
C [auth D]PF00181e8fn2D2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
C [auth D]PF03947e8fn2D1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
DA [auth e]PF00471e8fn2e1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
EA [auth f]PF00468e8fn2f1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
FA [auth g]PF01632e8fn2g1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
GA [auth h]PF00444e8fn2h1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
D [auth E]PF00297e8fn2E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
E [auth F]PF00573e8fn2F1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth G]PF00281,PF00673e8fn2G1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
G [auth H]PF00347e8fn2H1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
H [auth I]PF01281e8fn2I1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
I [auth J]PF00466e8fn2J1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S ribosomal RNA---
J [auth K]50S ribosomal protein L11
K [auth L]50S ribosomal protein L13
L [auth M]50S ribosomal protein L14
M [auth N]50S ribosomal protein L15
N [auth O]50S ribosomal protein L16
O [auth P]50S ribosomal protein L17
P [auth Q]50S ribosomal protein L18
Q [auth R]50S ribosomal protein L19
R [auth S]50S ribosomal protein L20
S [auth T]50S ribosomal protein L21
5S ribosomal RNA---
T [auth U]50S ribosomal protein L22
U [auth V]50S ribosomal protein L23
V [auth W]50S ribosomal protein L24
W [auth X]50S ribosomal protein L25
X [auth Y]50S ribosomal protein L27
Y [auth Z]50S ribosomal protein L28
Z [auth a]50S ribosomal protein L29
AA [auth b]50S ribosomal protein uL30
BA [auth c]50S ribosomal protein L31 type B
CA [auth d]50S ribosomal protein L32
C [auth D]50S ribosomal protein L2
DA [auth e]50S ribosomal protein L33
EA [auth f]50S ribosomal protein L34
FA [auth g]50S ribosomal protein L35
GA [auth h]50S ribosomal protein L36
HA [auth i]50S ribosomal protein bL38- - -
D [auth E]50S ribosomal protein L3
E [auth F]50S ribosomal protein L4
F [auth G]50S ribosomal protein L5
G [auth H]50S ribosomal protein L6
H [auth I]50S ribosomal protein L9
I [auth J]50S ribosomal protein L10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth K]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
J [auth K]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
J [auth K]IPR000911Ribosomal protein uL11Family
J [auth K]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
J [auth K]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
J [auth K]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
J [auth K]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
K [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
K [auth L]IPR005822Large ribosomal subunit protein uL13Family
K [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
K [auth L]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
L [auth M]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
L [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
L [auth M]IPR000218Large ribosomal subunit protein uL14Family
L [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
M [auth N]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
M [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
M [auth N]IPR030878Large ribosomal subunit protein uL15Family
M [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
M [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
N [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
N [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
N [auth O]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
N [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth O]IPR047873Large ribosomal subunit protein uL16Family
O [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
O [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
O [auth P]IPR000456Large ribosomal subunit protein bL17Family
P [auth Q]IPR005484Large ribosomal subunit protein uL18Family
P [auth Q]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
Q [auth R]IPR001857Large ribosomal subunit protein bL19Family
Q [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
Q [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
Q [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
R [auth S]IPR005813Large ribosomal subunit protein bL20Family
S [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
S [auth T]IPR001787Large ribosomal subunit protein bL21Family
S [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
S [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
T [auth U]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
T [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
T [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth U]IPR001063Large ribosomal subunit protein uL22Family
T [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
U [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
U [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
U [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth W]IPR003256Large ribosomal subunit protein uL24Family
V [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
V [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth W]IPR005824KOWDomain
V [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
W [auth X]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
W [auth X]IPR001021Ribosomal protein bL25, long-formFamily
W [auth X]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
W [auth X]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
W [auth X]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
W [auth X]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
X [auth Y]IPR001684Large ribosomal subunit protein bL27Family
X [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
Y [auth Z]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
Y [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
Y [auth Z]IPR026569Large ribosomal subunit protein bL28Family
Y [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Z [auth a]IPR001854Large ribosomal subunit protein uL29Family
Z [auth a]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AA [auth b]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
AA [auth b]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
AA [auth b]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
BA [auth c]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
BA [auth c]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
BA [auth c]IPR027493Large ribosomal subunit protein bL31 type BFamily
BA [auth c]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
CA [auth d]IPR002677Large ribosomal subunit protein bL32Family
CA [auth d]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth d]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
C [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth D]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth D]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth D]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth D]IPR002171Large ribosomal subunit protein uL2Family
DA [auth e]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth e]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
DA [auth e]IPR001705Large ribosomal subunit protein bL33Family
DA [auth e]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
EA [auth f]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
EA [auth f]IPR000271Large ribosomal subunit protein bL34Family
FA [auth g]IPR021137Large ribosomal subunit protein bL35-likeFamily
FA [auth g]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
FA [auth g]IPR001706Large ribosomal subunit protein bL35Family
FA [auth g]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
GA [auth h]IPR000473Large ribosomal subunit protein bL36Family
GA [auth h]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
D [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth E]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth E]IPR000597Large ribosomal subunit protein uL3Family
E [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth F]IPR002136Large ribosomal subunit protein uL4Family
E [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth G]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
F [auth G]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth G]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth G]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth G]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
F [auth G]IPR002132Large ribosomal subunit protein uL5Family
G [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth H]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
G [auth H]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
H [auth I]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
H [auth I]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
H [auth I]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
H [auth I]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
H [auth I]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
H [auth I]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
H [auth I]IPR000244Large ribosomal subunit protein bL9Family
I [auth J]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
I [auth J]IPR001790Large ribosomal subunit protein uL10Family
I [auth J]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
I [auth J]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
I [auth J]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site