8FJK
Golden Shiner Reovirus Core Polar Vertex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07925 | e8fjkA1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF07925 | ECOD (1.6) |
A | PF07925 | e8fjkA3 | A: alpha complex topology | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology) | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology) | T: C-terminal additional helical subdomain in reovirus polymerase lambda3 | F: PF07925 | ECOD (1.6) |
A | PF07925 | e8fjkA4 | A: alpha complex topology | X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology) | H: N-terminal additional helical subdomain in reovirus polymerase lambda3 | T: N-terminal additional helical subdomain in reovirus polymerase lambda3 | F: PF07925 | ECOD (1.6) |
A | PF07925 | e8fjkA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF07925 | ECOD (1.6) |
C | PF22033 | e8fjkC1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
D | PF22033 | e8fjkD1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
D | PF13912 | e8fjkD2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
F | PF22033 | e8fjkF1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
F | PF13912 | e8fjkF2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
H | PF22033 | e8fjkH2 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
H | PF13912 | e8fjkH1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
I | PF13912,PF22033 | e8fjkI1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF13912,PF22033 | ECOD (1.6) |
J | PF22033 | e8fjkJ1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
J | PF13912 | e8fjkJ2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
L | PF22033 | e8fjkL1 | A: a+b complex topology | X: Inner layer core protein p3-related (From Topology) | H: Inner layer core protein p3-related (From Topology) | T: Inner layer core protein p3-related | F: PF22033 | ECOD (1.6) |
L | PF13912 | e8fjkL2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF13912 | ECOD (1.6) |
M | F_UNCLASSIFIED | e8fjkM1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: F_UNCLASSIFIED | ECOD (1.6) |
AA [auth b] | PF03084 | e8fjkb1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
IA [auth d] | PF03084 | e8fjkd1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
JA [auth e] | PF03084 | e8fjke1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
LA [auth g] | PF03084 | e8fjkg1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
MA [auth h] | PF03084 | e8fjkh1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
O [auth V] | PF03084 | e8fjkV1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
P [auth W] | PF03084 | e8fjkW1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
Q [auth X] | PF03084 | e8fjkX1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
RA [auth n] | PF03084 | e8fjkn1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
T [auth a] | PF03084 | e8fjka1 | A: alpha complex topology | X: Core protein VP6 (From Topology) | H: Core protein VP6 (From Topology) | T: Core protein VP6 | F: PF03084 | ECOD (1.6) |
HA [auth c] | PF06016 | e8fjkc6 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
HA [auth c] | PF21060 | e8fjkc3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
HA [auth c] | PF21061 | e8fjkc7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
HA [auth c] | PF21062,PF21065 | e8fjkc1 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
HA [auth c] | PF21063 | e8fjkc2 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
HA [auth c] | PF21064 | e8fjkc5 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
HA [auth c] | PF21065 | e8fjkc4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
HA [auth c] | PF21066 | e8fjkc8 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
KA [auth f] | PF06016 | e8fjkf5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
KA [auth f] | PF21060 | e8fjkf8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
KA [auth f] | PF21061 | e8fjkf4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
KA [auth f] | PF21062,PF21065 | e8fjkf2 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
KA [auth f] | PF21063 | e8fjkf6 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
KA [auth f] | PF21064 | e8fjkf3 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
KA [auth f] | PF21065 | e8fjkf1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
KA [auth f] | PF21066 | e8fjkf7 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
NA [auth i] | PF06016 | e8fjki3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
NA [auth i] | PF21060 | e8fjki8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
NA [auth i] | PF21061 | e8fjki7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
NA [auth i] | PF21062,PF21065 | e8fjki2 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
NA [auth i] | PF21063 | e8fjki1 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
NA [auth i] | PF21064 | e8fjki5 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
NA [auth i] | PF21065 | e8fjki4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
NA [auth i] | PF21066 | e8fjki6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
R [auth Y] | PF06016 | e8fjkY7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
R [auth Y] | PF21060 | e8fjkY1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
R [auth Y] | PF21061 | e8fjkY8 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
R [auth Y] | PF21062,PF21065 | e8fjkY2 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
R [auth Y] | PF21063 | e8fjkY4 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
R [auth Y] | PF21064 | e8fjkY5 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
R [auth Y] | PF21065 | e8fjkY6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
R [auth Y] | PF21066 | e8fjkY3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
S [auth Z] | PF06016 | e8fjkZ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF06016 | ECOD (1.6) |
S [auth Z] | PF21060 | e8fjkZ3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21060 | ECOD (1.6) |
S [auth Z] | PF21061 | e8fjkZ5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF21061 | ECOD (1.6) |
S [auth Z] | PF21062,PF21065 | e8fjkZ6 | A: a+b two layers | X: ferredoxin-like domain in VP1 (From Topology) | H: ferredoxin-like domain in VP1 (From Topology) | T: ferredoxin-like domain in VP1 | F: PF21062,PF21065 | ECOD (1.6) |
S [auth Z] | PF21063 | e8fjkZ4 | A: a+b three layers | X: HIT-like | H: HIT-related (From Topology) | T: HIT-related | F: PF21063 | ECOD (1.6) |
S [auth Z] | PF21064 | e8fjkZ7 | A: a+b complex topology | X: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | H: Rotavirus NSP2 fragment, N-terminal domain (From Topology) | T: Rotavirus NSP2 fragment, N-terminal domain | F: PF21064 | ECOD (1.6) |
S [auth Z] | PF21065 | e8fjkZ1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21065 | ECOD (1.6) |
S [auth Z] | PF21066 | e8fjkZ8 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF21066 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07925 | Reovirus RNA-dependent RNA polymerase lambda 3 (RdRP_5) | Reovirus RNA-dependent RNA polymerase lambda 3 | - | Family | |
PF07781 | Reovirus minor core protein Mu-2 (Reovirus_Mu2) | Reovirus minor core protein Mu-2 | - | Family | |
PF13912 | C2H2-type zinc finger (zf-C2H2_6) | C2H2-type zinc finger | - | Domain | |
PF03084 | Reoviral Sigma1/Sigma2 family (Sigma_1_2) | Reoviral Sigma1/Sigma2 family | - | Family | |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21064 | Reovirus core-spike protein lambda-2 (L2), N-terminal (Reovirus_L2_N) | Reovirus core-spike protein lambda-2 (L2), N-terminal | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21063 | Reovirus core-spike protein lambda-2 (L2), GTase domain (Reovirus_L2_GTase) | Reovirus core-spike protein lambda-2 (L2), GTase domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21066 | Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 (Reovirus_L2_MT2) | Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21065 | Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 (Reovirus_L2_MT1) | Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21060 | Reovirus core-spike protein lambda-2 (L2), 6th domain (Reovirus_L2_6th) | Reovirus core-spike protein lambda-2 (L2), 6th domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21062 | Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain (Reovirus_L2_4th) | Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF06016 | Reovirus core-spike protein lambda-2 (L2), C-terminal (Reovirus_L2_8th) | Reovirus core-spike protein lambda-2 (L2), C-terminal | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |
HA [auth c], KA [auth f], NA [auth i], R [auth Y], S [auth Z] | PF21061 | Reovirus core-spike protein lambda-2 (L2), 7th domain (Reovirus_L2_7th) | Reovirus core-spike protein lambda-2 (L2), 7th domain | Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ... | Domain |