8FHD
Cryo-EM structure of human voltage-gated sodium channel Nav1.6
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | PF07686 | e8fhdC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth C] | F_UNCLASSIFIED | e8fhdC1 | A: extended segments | X: Fibroblast growth factor receptor 3 transmembrane domain (From Topology) | H: Fibroblast growth factor receptor 3 transmembrane domain (From Topology) | T: Fibroblast growth factor receptor 3 transmembrane domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
PF06512 | Sodium ion transport-associated (Na_trans_assoc) | Sodium ion transport-associated | - | Family | |
PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth C] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth C] | IPR013106 | Immunoglobulin V-set domain | Domain |
B [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth C] | IPR027098 | Sodium channel subunit beta-1/beta-3 | Family |
IPR024583 | Voltage-gated Na+ ion channel, cytoplasmic domain | Domain | |
IPR001696 | Voltage gated sodium channel, alpha subunit | Family | |
IPR000048 | IQ motif, EF-hand binding site | Binding Site | |
IPR010526 | Sodium ion transport-associated domain | Domain | |
IPR005821 | Ion transport domain | Domain | |
IPR008054 | Voltage gated sodium channel, alpha-8 subunit | Family | |
IPR044564 | Voltage-gated sodium channel alpha subunit, inactivation gate | Domain | |
IPR043203 | Voltage-gated cation channel calcium and sodium | Family | |
IPR027359 | Voltage-dependent channel domain superfamily | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Voltage-gated calcium and sodium channels |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Potassium, Sodium, & Proton Ion-Selective | NaV1.6 voltage-gated sodium channel |