8FB9 | pdb_00008fb9

LH2-LH3 antenna in anti parallel configuration embedded in a nanodisc

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth V]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
X [auth T]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
V [auth R]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
T [auth P]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
R [auth N]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
FA [auth b]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
DA [auth Z]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
BA [auth X]	SCOP2B Superfamily	Light-harvesting complex subunits	8076359	3000199	SCOP2B (2022-06-29)
Y [auth U]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
W [auth S]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
U [auth Q]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
S [auth O]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
Q [auth M]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
EA [auth a]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
CA [auth Y]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)
AA [auth W]	SCOP2B Superfamily	Light-harvesting complex subunits	8037857	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth e]	Glyco_hydro_43	e8fb9e1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
M [auth c]	Glyco_hydro_43	e8fb9c1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
K	Glyco_hydro_43	e8fb9K1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
I	Glyco_hydro_43	e8fb9I1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
G	Glyco_hydro_43	e8fb9G1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
E [auth C]	Glyco_hydro_43	e8fb9C1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
C [auth D]	Glyco_hydro_43	e8fb9D1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
A	Spt4	e8fb9A1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Spt4	ECOD (v294.1)
P [auth f]	Glyco_hydro_43	e8fb9f1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
N [auth d]	Glyco_hydro_43	e8fb9d1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
L	Glyco_hydro_43	e8fb9L1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
J	Glyco_hydro_43	e8fb9J1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
H	Glyco_hydro_43	e8fb9H1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
F	Glyco_hydro_43	e8fb9F1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
D [auth E]	Glyco_hydro_43	e8fb9E1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
B	Spt4	e8fb9B1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Spt4	ECOD (v294.1)
Z [auth V]	Glyco_hydro_43	e8fb9V1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
X [auth T]	Glyco_hydro_43	e8fb9T1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
V [auth R]	Glyco_hydro_43	e8fb9R1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
T [auth P]	Glyco_hydro_43	e8fb9P1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
R [auth N]	Spt4	e8fb9N1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Spt4	ECOD (v294.1)
FA [auth b]	Glyco_hydro_43	e8fb9b1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
DA [auth Z]	Glyco_hydro_43	e8fb9Z1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
BA [auth X]	Glyco_hydro_43	e8fb9X1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
Y [auth U]	Glyco_hydro_43	e8fb9U1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
W [auth S]	Glyco_hydro_43	e8fb9S1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
U [auth Q]	Glyco_hydro_43	e8fb9Q1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
S [auth O]	Glyco_hydro_43	e8fb9O1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
Q [auth M]	Spt4	e8fb9M1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Spt4	ECOD (v294.1)
EA [auth a]	Glyco_hydro_43	e8fb9a1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
CA [auth Y]	Glyco_hydro_43	e8fb9Y1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)
AA [auth W]	Glyco_hydro_43	e8fb9W1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth D], E [auth C], G, I, A, C [auth D], E [auth C], G, I, K, M [auth c], O [auth e]	Light-harvesting protein B800-820 alpha chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
B, D [auth E], F, H, J, B, D [auth E], F, H, J, L, N [auth d], P [auth f]	Light-harvesting protein B800-820 beta chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	Light-harvesting protein B-800/850 beta 1 chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], U [auth Q], W [auth S], Y [auth U]	Light-harvesting protein B-800/850 alpha chain	chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth D], E [auth C], G, I, A, C [auth D], E [auth C], G, I, K, M [auth c], O [auth e]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A, C [auth D], E [auth C], G, I, A, C [auth D], E [auth C], G, I, K, M [auth c], O [auth e]	IPR018332	Antenna complex, alpha subunit	Family
A, C [auth D], E [auth C], G, I, A, C [auth D], E [auth C], G, I, K, M [auth c], O [auth e]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, D [auth E], F, H, J, B, D [auth E], F, H, J, L, N [auth d], P [auth f]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B, D [auth E], F, H, J, B, D [auth E], F, H, J, L, N [auth d], P [auth f]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B, D [auth E], F, H, J, B, D [auth E], F, H, J, L, N [auth d], P [auth f]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, D [auth E], F, H, J, B, D [auth E], F, H, J, L, N [auth d], P [auth f]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
B, D [auth E], F, H, J, B, D [auth E], F, H, J, L, N [auth d], P [auth f]	IPR002362	Light-harvesting protein B beta chain	Family
BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR000066	Antenna complex, alpha/beta subunit	Domain
BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR035889	Light-harvesting complex	Homologous Superfamily
BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], BA [auth X], DA [auth Z], FA [auth b], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR002362	Light-harvesting protein B beta chain	Family
AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR018332	Antenna complex, alpha subunit	Family
AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], AA [auth W], CA [auth Y], EA [auth a], Q [auth M], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth W], B, BA [auth X], C [auth D] A, AA [auth W], B, BA [auth X], C [auth D], CA [auth Y], D [auth E], DA [auth Z], E [auth C], EA [auth a], F, FA [auth b], G, H, I, J, K, L, M [auth c], N [auth d], O [auth e], P [auth f], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T], Y [auth U], Z [auth V]	PDBTM	Annotated as membrane protein by PDBTM