Cryo-EM structure of a Zinc-loaded wild-type YiiP-Fab complex
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | V-set_8 | e8f6eF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| F | C1-set_1 | e8f6eF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
| C [auth D] | V-set_8 | e8f6eD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| C [auth D] | C1-set_1 | e8f6eD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
| E | C1-set_4 | e8f6eE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
| E | V-set | e8f6eE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
| B [auth C] | C1-set_4 | e8f6eC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
| B [auth C] | V-set | e8f6eC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
| D [auth B] | Cation_efflux | e8f6eB1 | A: alpha bundles | X: Cation efflux protein transmembrane domain-like (From Topology) | H: Cation efflux protein transmembrane domain-like (From Topology) | T: Cation efflux protein transmembrane domain-like | F: Cation_efflux | ECOD (1.6) |
| D [auth B] | ZT_dimer | e8f6eB2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Cation efflux protein cytoplasmic domain-like (From Topology) | T: Cation efflux protein cytoplasmic domain-like | F: ZT_dimer | ECOD (1.6) |
| A | Cation_efflux | e8f6eA1 | A: alpha bundles | X: Cation efflux protein transmembrane domain-like (From Topology) | H: Cation efflux protein transmembrane domain-like (From Topology) | T: Cation efflux protein transmembrane domain-like | F: Cation_efflux | ECOD (1.6) |
| A | ZT_dimer | e8f6eA2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Cation efflux protein cytoplasmic domain-like (From Topology) | T: Cation efflux protein cytoplasmic domain-like | F: ZT_dimer | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| C [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| D [auth B] | 1.20.1510.10 | Mainly Alpha | Up-down Bundle | Alpha-lytic protease prodomain-like | Cation efflux protein transmembrane domain | CATH (utative) |
| D [auth B] | 3.30.70.1350 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Cation efflux protein, cytoplasmic domain | CATH (utative) |
| A | 1.20.1510.10 | Mainly Alpha | Up-down Bundle | Alpha-lytic protease prodomain-like | Cation efflux protein transmembrane domain | CATH (utative) |
| A | 3.30.70.1350 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Cation efflux protein, cytoplasmic domain | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| C [auth D], F | Heavy Chain | IGHV3 | - | cadmium and zinc efflux pump fief | SAbDab (2025-11-28) |
| B [auth C], E | Light Chain | IGKV1 | Kappa | cadmium and zinc efflux pump fief | SAbDab (2025-11-28) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, D [auth B] | PF16916 | Cation efflux protein, cytoplasmic domain (ZT_dimer) | Cation efflux protein, cytoplasmic domain | This entry represents the cytoplasmic domain in Cation Diffusion Facilitator (CDD) transporter proteins including zinc transporters. These proteins are involved in the transport of divalent metal cations across cellular membranes. They facilitate the ... | Domain |
| A, D [auth B] | PF01545 | Cation efflux transmembrane domain (Cation_efflux) | Cation efflux transmembrane domain | This entry represents the transmembrane domain at the N-terminal in Cation Diffusion Facilitator (CDF) transporter proteins. These proteins are involved in the transport of divalent metal cations across cellular membranes. They facilitate the efflux ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, D [auth B] | IPR050291 | Cation-efflux pump FieF-like | Family |
| A, D [auth B] | IPR027470 | Cation efflux protein, cytoplasmic domain | Domain |
| A, D [auth B] | IPR036837 | Cation efflux protein, cytoplasmic domain superfamily | Homologous Superfamily |
| A, D [auth B] | IPR002524 | Cation efflux | Family |
| A, D [auth B] | IPR027469 | Cation efflux transmembrane domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Cation diffusion facilitator | Bacterial zinc transporters |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














