8F5Z
Composite map of CryoEM structure of Arabidopsis thaliana phytochrome A
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00512 | e8f5zB6 | A: alpha duplicates or obligate multimers | X: ROP-like | H: Homodimeric domain of signal transducing histidine kinase (From Topology) | T: Homodimeric domain of signal transducing histidine kinase | F: PF00512 | ECOD (1.6) |
A [auth B] | PF02518 | e8f5zB3 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: PF02518 | ECOD (1.6) |
A [auth B] | PF00360 | e8f5zB2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF00360 | ECOD (1.6) |
A [auth B] | PF00989 | e8f5zB4 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF00989 | ECOD (1.6) |
A [auth B] | PF01590 | e8f5zB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
A [auth B] | PF08446 | e8f5zB5 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
B [auth A] | PF00512 | e8f5zA6 | A: alpha duplicates or obligate multimers | X: ROP-like | H: Homodimeric domain of signal transducing histidine kinase (From Topology) | T: Homodimeric domain of signal transducing histidine kinase | F: PF00512 | ECOD (1.6) |
B [auth A] | PF02518 | e8f5zA5 | A: a+b two layers | X: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like | H: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (From Topology) | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: PF02518 | ECOD (1.6) |
B [auth A] | PF00360 | e8f5zA2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF00360 | ECOD (1.6) |
B [auth A] | PF00989 | e8f5zA4 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF00989 | ECOD (1.6) |
B [auth A] | PF01590 | e8f5zA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
B [auth A] | PF08446 | e8f5zA3 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF00512 | His Kinase A (phospho-acceptor) domain (HisKA) | His Kinase A (phospho-acceptor) domain | Dimerisation and phospho-acceptor domain of histidine kinases. | Domain |
A [auth B], B [auth A] | PF01590 | GAF domain (GAF) | GAF domain | This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyse ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regul ... | Domain |
A [auth B], B [auth A] | PF00989 | PAS fold (PAS) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (M ... | Domain |
A [auth B], B [auth A] | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. | Domain |
A [auth B], B [auth A] | PF00360 | Phytochrome region (PHY) | Phytochrome region | Phytochromes are red/far-red photochromic biliprotein photoreceptors which regulate plant development. They are widely represented in both photosynthetic and non-photosynthetic bacteria and are known in a variety of fungi. Although sequence similarit ... | Domain |
A [auth B], B [auth A] | PF08446 | PAS fold (PAS_2) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. | Domain |