8F41

3-methylcrotonyl-CoA carboxylase in filament, alpha-subunit centered

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth I]	F_UNCLASSIFIED	e8f41I1	A: a+b two layers	X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)	H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related	T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth I]	PF02786	e8f41I5	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: PF02786	ECOD (1.6)
D [auth I]	PF02785	e8f41I4	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: PF02785	ECOD (1.6)
D [auth I]	PF00364	e8f41I2	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)
D [auth I]	PF00289	e8f41I3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: PF00289	ECOD (1.6)
E [auth K]	F_UNCLASSIFIED	e8f41K5	A: a+b two layers	X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)	H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related	T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth K]	PF02786	e8f41K4	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: PF02786	ECOD (1.6)
E [auth K]	PF02785	e8f41K1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: PF02785	ECOD (1.6)
E [auth K]	PF00364	e8f41K2	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)
E [auth K]	PF00289	e8f41K3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: PF00289	ECOD (1.6)
F [auth M]	F_UNCLASSIFIED	e8f41M2	A: a+b two layers	X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)	H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related	T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth M]	PF02786	e8f41M3	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: PF02786	ECOD (1.6)
F [auth M]	PF02785	e8f41M1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: PF02785	ECOD (1.6)
F [auth M]	PF00364	e8f41M4	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)
F [auth M]	PF00289	e8f41M5	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: PF00289	ECOD (1.6)
J [auth H]	F_UNCLASSIFIED	e8f41H3	A: a+b two layers	X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)	H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related	T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	F: F_UNCLASSIFIED	ECOD (1.6)
J [auth H]	PF02786	e8f41H1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: PF02786	ECOD (1.6)
J [auth H]	PF02785	e8f41H5	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: PF02785	ECOD (1.6)
J [auth H]	PF00364	e8f41H2	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)
J [auth H]	PF00289	e8f41H4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: PF00289	ECOD (1.6)
K [auth J]	F_UNCLASSIFIED	e8f41J4	A: a+b two layers	X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)	H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related	T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	F: F_UNCLASSIFIED	ECOD (1.6)
K [auth J]	PF02786	e8f41J1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: PF02786	ECOD (1.6)
K [auth J]	PF02785	e8f41J2	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: PF02785	ECOD (1.6)
K [auth J]	PF00364	e8f41J5	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)
K [auth J]	PF00289	e8f41J3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: PF00289	ECOD (1.6)
L	F_UNCLASSIFIED	e8f41L5	A: a+b two layers	X: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)	H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related	T: Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit	F: F_UNCLASSIFIED	ECOD (1.6)
L	PF02786	e8f41L2	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: ATP-grasp	F: PF02786	ECOD (1.6)
L	PF02785	e8f41L1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: PF02785	ECOD (1.6)
L	PF00364	e8f41L3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: PF00364	ECOD (1.6)
L	PF00289	e8f41L4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: PreATP-grasp domain	F: PF00289	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], I [auth E]	PF01039	Carboxyl transferase domain (Carboxyl_trans)	Carboxyl transferase domain	-	Family
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	PF00364	Biotin-requiring enzyme (Biotin_lipoyl)	Biotin-requiring enzyme	This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2)	Carbamoyl-phosphate synthase L chain, ATP binding domain	Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ...	Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See Pfam:PF00988. The small chain has a GATase domain in the carboxyl terminus. See Pfam:PF00117. The ATP binding domain (this one) has an ATP-grasp fold.	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	PF00289	Biotin carboxylase, N-terminal domain (Biotin_carb_N)	Biotin carboxylase, N-terminal domain	This domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes [1,3], and propionyl-CoA carboxylase A chain [2].	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	PF02785	Biotin carboxylase C-terminal domain (Biotin_carb_C)	Biotin carboxylase C-terminal domain	Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are i ...	Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are in this C-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], I [auth E]	3-methylcrotonyl-CoA carboxylase, beta-subunit	CoA carboxylase activity methylcrotonoyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity	pyruvate family amino acid metabolic process catabolic process oxoacid metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process branched-chain amino acid catabolic process alpha-amino acid metabolic process pyruvate family amino acid catabolic process cellular catabolic process carboxylic acid catabolic process small molecule metabolic process branched-chain amino acid metabolic process amino acid catabolic process pyruvate family amino acid metabolic process catabolic process oxoacid metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process branched-chain amino acid catabolic process alpha-amino acid metabolic process pyruvate family amino acid catabolic process cellular catabolic process carboxylic acid catabolic process small molecule metabolic process branched-chain amino acid metabolic process amino acid catabolic process L-leucine metabolic process organonitrogen compound catabolic process L-leucine catabolic process organonitrogen compound metabolic process cellular metabolic process carboxylic acid metabolic process L-amino acid catabolic process primary metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process metabolic process cellular process small molecule catabolic process	protein-containing complex catalytic complex methylcrotonoyl-CoA carboxylase complex membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	3-methylcrotonyl-CoA carboxylase, alpha-subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding CoA carboxylase activity propionyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity urea carboxylase activity ligase activity, forming carbon-nitrogen bonds methylcrotonoyl-CoA carboxylase activity cation binding metal ion binding	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], I [auth E]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], I [auth E]	IPR045190	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like	Family
A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], A [auth B], B [auth D], C [auth F], G [auth A], H [auth C], I [auth E]	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR005481	Biotin carboxylase-like, N-terminal domain	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR011761	ATP-grasp fold	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR011764	Biotin carboxylation domain	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR005482	Biotin carboxylase, C-terminal	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR005479	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Domain
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR011054	Rudiment single hybrid motif	Homologous Superfamily
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR011053	Single hybrid motif	Homologous Superfamily
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR001882	Biotin-binding site	Binding Site
D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], D [auth I], E [auth K], F [auth M], J [auth H], K [auth J], L	IPR000089	Biotin/lipoyl attachment	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8F41

3-methylcrotonyl-CoA carboxylase in filament, alpha-subunit centered

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage