Cryo-EM structure of Lumazine synthase nanoparticle linked to VP8* antigen
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| BA [auth 1] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| CB [auth s] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| DA [auth 3] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| EA [auth 4] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| EB [auth u] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| FA [auth 5] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| FB [auth v] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| GB [auth w] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| HB [auth x] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| JA [auth 9] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| KA [auth a] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| LA [auth b] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| NA [auth d] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| QA [auth g] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| RA [auth h] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| TA [auth j] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| UA [auth k] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| Y | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| ZA [auth p] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| Z | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| YA [auth o] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| XA [auth n] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| WA [auth m] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| VA [auth l] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| SA [auth i] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| PA [auth f] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| OA [auth e] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| MA [auth c] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| IA [auth 8] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| HA [auth 7] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| GA [auth 6] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| DB [auth t] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| CA [auth 2] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| BB [auth r] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| AB [auth q] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| AA [auth 0] | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Lumazine synthase | 8036909 | 3001085 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Ion_trans | e8f25B1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| BA [auth 1] | Ion_trans | e8f2511 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| C | Ion_trans | e8f25C1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| CB [auth s] | Ion_trans | e8f25s1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| DA [auth 3] | Ion_trans | e8f2531 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| EA [auth 4] | Ion_trans | e8f2541 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| EB [auth u] | Ion_trans | e8f25u1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| FA [auth 5] | Ion_trans | e8f2551 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| FB [auth v] | Ion_trans | e8f25v1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| G | Ion_trans | e8f25G1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| GB [auth w] | Ion_trans | e8f25w1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| H | Ion_trans | e8f25H1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| HB [auth x] | Ion_trans | e8f25x1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| J | Ion_trans | e8f25J1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| JA [auth 9] | Ion_trans | e8f2591 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| K | Ion_trans | e8f25K1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| KA [auth a] | Ion_trans | e8f25a1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| L | Ion_trans | e8f25L1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| LA [auth b] | Ion_trans | e8f25b1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| NA [auth d] | Ion_trans | e8f25d1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| O | Ion_trans | e8f25O1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| Q | Ion_trans | e8f25Q1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| QA [auth g] | Ion_trans | e8f25g1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| R | Ion_trans | e8f25R1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| RA [auth h] | Ion_trans | e8f25h1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| T | Ion_trans | e8f25T1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| TA [auth j] | Ion_trans | e8f25j1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| UA [auth k] | Ion_trans | e8f25k1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| Y | Ion_trans | e8f25Y1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| ZA [auth p] | Ion_trans | e8f25p1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| Z | Ion_trans | e8f25Z1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| YA [auth o] | Ion_trans | e8f25o1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| XA [auth n] | Ion_trans | e8f25n1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| X | Ion_trans | e8f25X1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| WA [auth m] | Ion_trans | e8f25m1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| W | Ion_trans | e8f25W1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| VA [auth l] | Ion_trans | e8f25l1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| V | Ion_trans | e8f25V1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| U | Ion_trans | e8f25U1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| SA [auth i] | Ion_trans | e8f25i1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| S | Ion_trans | e8f25S1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| PA [auth f] | Ion_trans | e8f25f1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| P | Ion_trans | e8f25P1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| OA [auth e] | Ion_trans | e8f25e1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| N | Ion_trans | e8f25N1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| MA [auth c] | Ion_trans | e8f25c1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| M | Ion_trans | e8f25M1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| IA [auth 8] | Ion_trans | e8f2581 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| I | Ion_trans | e8f25I1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| HA [auth 7] | Ion_trans | e8f2571 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| GA [auth 6] | Ion_trans | e8f2561 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| F | Ion_trans | e8f25F1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| E | Ion_trans | e8f25E1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| DB [auth t] | Ion_trans | e8f25t1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| D | Ion_trans | e8f25D1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| CA [auth 2] | Ion_trans | e8f2521 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| BB [auth r] | Ion_trans | e8f25r1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| AB [auth q] | Ion_trans | e8f25q1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| AA [auth 0] | Ion_trans | e8f2501 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
| A | Ion_trans | e8f25A1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Ion_trans | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00885 | 6,7-dimethyl-8-ribityllumazine synthase (DMRL_synthase) | 6,7-dimethyl-8-ribityllumazine synthase | This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function f ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| 6,7-dimethyl-8-ribityllumazine synthase |
|
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036467 | Lumazine/riboflavin synthase superfamily | Homologous Superfamily | |
| IPR034964 | Lumazine synthase | Family | |
| IPR002180 | Lumazine/riboflavin synthase | Family |














