8EVI | pdb_00008evi

CX3CR1 nucleosome and PU.1 complex containing disulfide bond mutations


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth O]SCOP2B SuperfamilyWinged helix DNA-binding domain 8003116 3000034 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyCore histone-like 8099192 3001387 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyCore histone-like 8066283 3001387 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyCore histone-like 8066283 3001387 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyCore histone-like 8099192 3001387 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth O]PF00178Ets-domain (Ets)Ets-domainDomain
I [auth G]PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
E [auth C]PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
D [auth B],
H [auth F]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth O]Transcription factor PU.1
K [auth M],
L [auth N]
Single-chain variable fragment---
I [auth G]Histone H2A type 2-C
F [auth D],
J [auth H]
Histone H2B type 2-E
E [auth C]Histone H2A type 2-C
D [auth B],
H [auth F]
Histone H4
C [auth A],
G [auth E]
Histone H3.1
B [auth I]DNA (167-MER)---
A [auth J]DNA (167-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth O]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
M [auth O]IPR000418Ets domainDomain
M [auth O]IPR046328ETS familyFamily
I [auth G]IPR009072Histone-foldHomologous Superfamily
I [auth G]IPR002119Histone H2AFamily
I [auth G]IPR032454Histone H2A, C-terminal domainDomain
I [auth G]IPR032458Histone H2A conserved siteConserved Site
I [auth G]IPR007125Core Histone H2A/H2B/H3 domainDomain
F [auth D],
J [auth H]
IPR009072Histone-foldHomologous Superfamily
F [auth D],
J [auth H]
IPR000558Histone H2BFamily
F [auth D],
J [auth H]
IPR007125Core Histone H2A/H2B/H3 domainDomain
F [auth D],
J [auth H]
IPR055333Histone H2B, conserved siteConserved Site
E [auth C]IPR009072Histone-foldHomologous Superfamily
E [auth C]IPR002119Histone H2AFamily
E [auth C]IPR032454Histone H2A, C-terminal domainDomain
E [auth C]IPR032458Histone H2A conserved siteConserved Site
E [auth C]IPR007125Core Histone H2A/H2B/H3 domainDomain
D [auth B],
H [auth F]
IPR009072Histone-foldHomologous Superfamily
D [auth B],
H [auth F]
IPR035425CENP-T/Histone H4, histone foldDomain
D [auth B],
H [auth F]
IPR001951Histone H4Family
D [auth B],
H [auth F]
IPR019809Histone H4, conserved siteConserved Site
D [auth B],
H [auth F]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C [auth A],
G [auth E]
IPR009072Histone-foldHomologous Superfamily
C [auth A],
G [auth E]
IPR007125Core Histone H2A/H2B/H3 domainDomain
C [auth A],
G [auth E]
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth G]PharosQ16777
F [auth D],
J [auth H]
PharosQ16778
E [auth C]PharosQ16777
D [auth B],
H [auth F]
PharosP62805
C [auth A],
G [auth E]
PharosP68431