8ETU

Class2 of the INO80-Hexasome complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth T]PF06068e8etuT2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
C [auth T]PF17856e8etuT1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
C [auth T]PF06068e8etuT3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
E [auth V]PF06068e8etuV3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
E [auth V]PF17856e8etuV1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
E [auth V]PF06068e8etuV2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
G [auth X]PF06068e8etuX2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
G [auth X]PF17856e8etuX3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
G [auth X]PF06068e8etuX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
D [auth U]PF06068e8etuU3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
D [auth U]PF17856e8etuU1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
D [auth U]PF06068e8etuU2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
F [auth W]PF06068e8etuW2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
F [auth W]PF17856e8etuW1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
F [auth W]PF06068e8etuW3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)
H [auth Y]PF06068e8etuY2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF06068ECOD (1.6)
H [auth Y]PF17856e8etuY1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17856ECOD (1.6)
H [auth Y]PF06068e8etuY3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06068ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R]PF00022Actin (Actin)Actin- Family
B [auth S]PF08265YL1 nuclear protein C-terminal domain (YL1_C)YL1 nuclear protein C-terminal domainThis domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins.Domain
C [auth T],
E [auth V],
G [auth X]
PF06068TIP49 P-loop domain (TIP49)TIP49 P-loop domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
C [auth T],
E [auth V],
G [auth X]
PF17856TIP49 AAA-lid domain (TIP49_C)TIP49 AAA-lid domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
D [auth U],
F [auth W],
H [auth Y]
PF06068TIP49 P-loop domain (TIP49)TIP49 P-loop domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
D [auth U],
F [auth W],
H [auth Y]
PF17856TIP49 AAA-lid domain (TIP49_C)TIP49 AAA-lid domainThis family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ...This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway [1]. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [2].
Domain
I [auth Q]PF00176SNF2-related domain (SNF2-rel_dom)SNF2-related domainThis domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ...This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1)[1,2,3]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors.
Domain
J [auth Z]PF04795PAPA-1-like conserved region (PAPA-1)PAPA-1-like conserved region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R]Actin-related protein 5-
B [auth S]Chromatin-remodeling complex subunit IES6-
C [auth T],
E [auth V],
G [auth X]
RuvB-like protein 1
D [auth U],
F [auth W],
H [auth Y]
RuvB-like protein 2
I [auth Q]Chromatin-remodeling ATPase INO80
J [auth Z]Ino eighty subunit 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
A [auth R]IPR004000Actin familyFamily
B [auth S]IPR013272Vps72/YL1, C-terminalDomain
B [auth S]IPR029525INO80 complex, subunit Ies6Family
C [auth T],
E [auth V],
G [auth X]
IPR041048RuvB-like, AAA-lid domainDomain
C [auth T],
E [auth V],
G [auth X]
IPR042487RuvBL1/2, DNA/RNA binding domainHomologous Superfamily
C [auth T],
E [auth V],
G [auth X]
IPR027238RuvB-likeFamily
C [auth T],
E [auth V],
G [auth X]
IPR010339TIP49, P-loop domainDomain
C [auth T],
E [auth V],
G [auth X]
IPR003593AAA+ ATPase domainDomain
C [auth T],
E [auth V],
G [auth X]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth U],
F [auth W],
H [auth Y]
IPR041048RuvB-like, AAA-lid domainDomain
D [auth U],
F [auth W],
H [auth Y]
IPR042487RuvBL1/2, DNA/RNA binding domainHomologous Superfamily
D [auth U],
F [auth W],
H [auth Y]
IPR027238RuvB-likeFamily
D [auth U],
F [auth W],
H [auth Y]
IPR010339TIP49, P-loop domainDomain
D [auth U],
F [auth W],
H [auth Y]
IPR003593AAA+ ATPase domainDomain
D [auth U],
F [auth W],
H [auth Y]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth Q]IPR000330SNF2, N-terminalDomain
I [auth Q]IPR031047DNA helicase INO80, DEAQ-box helicase domainDomain
I [auth Q]IPR049730SNF2/RAD5-like, C-terminal helicase domainDomain
I [auth Q]IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
I [auth Q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth Q]IPR001650Helicase, C-terminal domain-likeDomain
I [auth Q]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
I [auth Q]IPR020838DBINO domainDomain
J [auth Z]IPR029523INO80 complex, subunit Ies2Family
J [auth Z]IPR006880INO80 complex subunit B-like conserved regionDomain