8ESR

Ytm1 associated nascent 60S ribosome (-fkbp39) State 2


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth E]PF01159e8esrE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
K [auth F]PF00327,PF08079e8esrF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
L [auth G]PF01248e8esrG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
M [auth H]PF00347e8esrH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
Q [auth L]PF01294e8esrL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
R [auth M]PF00467,PF01929e8esrM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
S [auth N]PF00827e8esrN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
T [auth O]PF00572e8esrO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
U [auth P]PF00237e8esrP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
V [auth Q]PF17135e8esrQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
W [auth R]PF01280e8esrR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
W [auth R]PF01280e8esrR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
X [auth S]F_UNCLASSIFIEDe8esrS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
X [auth S]PF01775e8esrS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
Y [auth U]PF01776e8esrU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
Z [auth V]PF00238e8esrV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
AA [auth W]PF00466e8esrW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
AA [auth W]PF17777e8esrW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
BA [auth X]PF00276,PF03939e8esrX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
CA [auth Y]PF16906e8esrY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
DA [auth Z]PF00467,PF01777e8esrZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
EA [auth a]PF00828e8esra1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
GA [auth c]PF01248e8esrc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HA [auth d]PF01198e8esrd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
IA [auth e]PF01655e8esre1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
JA [auth f]PF01247e8esrf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
KA [auth g]PF01199e8esrg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
LA [auth h]PF00831e8esrh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
MA [auth i]PF01158e8esri1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
NA [auth j]PF01907e8esrj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
OA [auth k]PF01781e8esrk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
PA [auth l]PF03657e8esrl2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PUA domainF: PF03657ECOD (1.6)
PA [auth l]PF17833e8esrl1 A: a+b two layersX: Cystatin-likeH: Pre-PUA domain (From Topology)T: Pre-PUA domainF: PF17833ECOD (1.6)
TA [auth p]PF00400e8esrp1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
UA [auth q]F_UNCLASSIFIEDe8esrq1 A: a+b two layersX: Alpha-beta plaitsH: NOL1/NOP2/sun N-terminal ferredoxin-like domain (From Topology)T: NOL1/NOP2/sun N-terminal ferredoxin-like domainF: F_UNCLASSIFIEDECOD (1.6)
UA [auth q]PF01189e8esrq2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01189ECOD (1.6)
XA [auth t]PF00327,PF08079e8esrt1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
YA [auth u]PF01246e8esru1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
BB [auth y]PF01912e8esry1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
F [auth A]PF04427e8esrA1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: PF04427ECOD (1.6)
G [auth B]PF00297e8esrB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
H [auth C]PF00573e8esrC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
H [auth C]PF14374e8esrC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
I [auth D]PF13959e8esrD2 A: alpha duplicates or obligate multimersX: RNA helicase Hera dimerization domain (From Topology)H: RNA helicase Hera dimerization domain (From Topology)T: RNA helicase Hera dimerization domainF: PF13959ECOD (1.6)
I [auth D]PF00270e8esrD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
I [auth D]PF00271e8esrD3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
K [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
K [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
L [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
M [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
N [auth I]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
N [auth I]PF07540Nucleolar complex-associated protein (NOC3p)Nucleolar complex-associated protein- Family
O [auth J]PF05890Eukaryotic rRNA processing protein EBP2 (Ebp2)Eukaryotic rRNA processing protein EBP2- Family
P [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
Q [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
R [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
R [auth M]PF00467KOW motif (KOW)KOW motif- Family
T [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
U [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
V [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
W [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
X [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
Y [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Z [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
AA [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
AA [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
BA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
BA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
CA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
CA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
DA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
DA [auth Z]PF00467KOW motif (KOW)KOW motif- Family
EA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
FA [auth b]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
FA [auth b]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
GA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
IA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
JA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
KA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
LA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
MA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
D [auth 7]PF03715Noc2p family (Noc2)Noc2p family- Family
NA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
OA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
PA [auth l]PF03657UPF0113 PUA domain (UPF0113)UPF0113 PUA domain- Domain
PA [auth l]PF17833UPF0113 Pre-PUA domain (UPF0113_N)UPF0113 Pre-PUA domain- Domain
QA [auth m]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
SA [auth o]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
TA [auth p]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
UA [auth q]PF17125N-terminal domain of 16S rRNA methyltransferase RsmF (Methyltr_RsmF_N)N-terminal domain of 16S rRNA methyltransferase RsmFThis is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising t ...This is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising the catalytic core of the enzyme [1].
Domain
UA [auth q]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/F- Family
VA [auth r]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
WA [auth s]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
E [auth 8]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
XA [auth t]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
XA [auth t]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
ZA [auth v]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
BB [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
F [auth A]PF04427Brix domain (Brix)Brix domain- Domain
G [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
H [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
H [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
I [auth D]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
I [auth D]PF13959Domain of unknown function (DUF4217) (DUF4217)Domain of unknown function (DUF4217)This short domain is found at the C-terminus of many helicase proteins.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]RNA (2142-MER)---
J [auth E]60S ribosomal protein L6
K [auth F]60S ribosomal protein L7-B
L [auth G]60S ribosomal protein L8
M [auth H]60S ribosomal protein L9-A
N [auth I]Nucleolar complex-associated protein 3
O [auth J]Probable rRNA-processing protein ebp2-
P [auth K]Putative ribosome biogenesis protein C8F11.04
Q [auth L]60S ribosomal protein L13
R [auth M]60S ribosomal protein L14
S [auth N]60S ribosomal protein L15-A
B [auth 2]RNA (150-MER)---
T [auth O]60S ribosomal protein L16-B
U [auth P]60S ribosomal protein L17-A
V [auth Q]60S ribosomal protein L18-A
W [auth R]60S ribosomal protein L19-A
X [auth S]60S ribosomal protein L20-A
Y [auth U]60S ribosomal protein L22
Z [auth V]60S ribosomal protein L23-A
AA [auth W]Ribosome assembly factor mrt4-
BA [auth X]60S ribosomal protein L25-A
CA [auth Y]60S ribosomal protein L26
C [auth 6]RNA (79-MER)---
DA [auth Z]60S ribosomal protein L27-A
EA [auth a]60S ribosomal protein L28-A
FA [auth b]Probable nucleolar GTP-binding protein 1
GA [auth c]60S ribosomal protein L30-2
HA [auth d]60S ribosomal protein L31
IA [auth e]60S ribosomal protein L32-A
JA [auth f]60S ribosomal protein L33-B
KA [auth g]60S ribosomal protein L34-A
LA [auth h]60S ribosomal protein L35
MA [auth i]60S ribosomal protein L36-B
D [auth 7]Noc2-
NA [auth j]60S ribosomal protein L37-B
OA [auth k]60S ribosomal protein L38-1
PA [auth l]60S ribosome subunit biogenesis protein nip7
QA [auth m]Ribosome biogenesis protein erb1
RA [auth n]Pescadillo homolog
SA [auth o]Uncharacterized RNA-binding protein C1827.05c
TA [auth p]Ribosome biogenesis protein ytm1
UA [auth q]25S rRNA (cytosine-C(5))-methyltransferase nop2
VA [auth r]Ribosome biogenesis protein nsa2-
WA [auth s]GTPase grn1
E [auth 8]60S ribosomal protein L39
XA [auth t]60S ribosomal protein L7-A
YA [auth u]Ribosome biogenesis protein rlp24-
ZA [auth v]Nucleolar protein 16-
AB [auth w]AdoMet-dependent rRNA methyltransferase spb1
BB [auth y]Eukaryotic translation initiation factor 6
CB [auth z]UPF0642 protein C32H8.05- -
DB [auth T]60S ribosomal protein L21-A
F [auth A]Ribosome biogenesis protein brx1
G [auth B]60S ribosomal protein L3-A
H [auth C]60S ribosomal protein L4-B
I [auth D]ATP-dependent RNA helicase has1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
J [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
J [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth E]IPR000915Large ribosomal subunit protein eL6Family
K [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
K [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
K [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
K [auth F]IPR039699Large ribosomal subunit protein uL30Family
K [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
K [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
K [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
L [auth G]IPR001921Large ribosomal subunit protein eL8Family
L [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
L [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
M [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
M [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
M [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
M [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
N [auth I]IPR016903Nucleolar complex-associated protein 3Family
N [auth I]IPR011501Nucleolar complex-associated protein 3, N-terminalDomain
N [auth I]IPR005612CCAAT-binding factorDomain
O [auth J]IPR008610Eukaryotic rRNA processingFamily
P [auth K]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
P [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
P [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
Q [auth L]IPR001380Large ribosomal subunit protein eL13Family
Q [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
R [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth M]IPR039660Large ribosomal subunit protein eL14Family
R [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
R [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
R [auth M]IPR005824KOWDomain
S [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
S [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
S [auth N]IPR000439Large ribosomal subunit protein eL15Family
T [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
T [auth O]IPR005822Large ribosomal subunit protein uL13Family
T [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
T [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
U [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
U [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
U [auth P]IPR001063Large ribosomal subunit protein uL22Family
U [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
V [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
V [auth Q]IPR000039Large ribosomal subunit protein eL18Family
V [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
W [auth R]IPR039547Large ribosomal subunit protein eL19Family
W [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
W [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
W [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
X [auth S]IPR028877Large ribosomal subunit protein eL20Family
X [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
X [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
Y [auth U]IPR002671Large ribosomal subunit protein eL22Family
Y [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Z [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Z [auth V]IPR000218Large ribosomal subunit protein uL14Family
Z [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
AA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
AA [auth W]IPR001790Large ribosomal subunit protein uL10Family
AA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
AA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
AA [auth W]IPR033867Ribosome assembly factor Mrt4Family
BA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
BA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
BA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
CA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
CA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CA [auth Y]IPR005824KOWDomain
CA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
DA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
DA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
DA [auth Z]IPR005824KOWDomain
DA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
DA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
EA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth a]IPR030878Large ribosomal subunit protein uL15Family
EA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
FA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
FA [auth b]IPR012973NOG, C-terminalDomain
FA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
FA [auth b]IPR041623NOG1, N-terminal helical domainDomain
FA [auth b]IPR006073GTP binding domainDomain
FA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
GA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
GA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
HA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
HA [auth d]IPR000054Large ribosomal subunit protein eL31Family
IA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IA [auth e]IPR001515Large ribosomal subunit protein eL32Family
IA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
JA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
JA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JA [auth f]IPR001780Large ribosomal subunit protein eL33Family
JA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
KA [auth g]IPR008195Large ribosomal subunit protein eL34Family
KA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
LA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
LA [auth h]IPR001854Large ribosomal subunit protein uL29Family
LA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
MA [auth i]IPR000509Large ribosomal subunit protein eL36Family
MA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
D [auth 7]IPR005343Nucleolar complex protein 2Family
NA [auth j]IPR001569Large ribosomal subunit protein eL37Family
NA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
NA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
OA [auth k]IPR002675Large ribosomal subunit protein eL38Family
OA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
PA [auth l]IPR015947PUA-like superfamilyHomologous Superfamily
PA [auth l]IPR005155UPF0113, PUA domainDomain
PA [auth l]IPR016686Ribosome biogenesis factor, NIP7Family
PA [auth l]IPR036974PUA domain superfamilyHomologous Superfamily
PA [auth l]IPR04059860S ribosome subunit biogenesis protein NIP7, pre-PUA domainDomain
PA [auth l]IPR002478PUA domainDomain
QA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
QA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
QA [auth m]IPR028598WD repeat BOP1/Erb1Family
QA [auth m]IPR001680WD40 repeatRepeat
QA [auth m]IPR012953BOP1, N-terminal domainDomain
QA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
RA [auth n]IPR001357BRCT domainDomain
RA [auth n]IPR010613PescadilloFamily
RA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
SA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth o]IPR000504RNA recognition motif domainDomain
SA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
TA [auth p]IPR019775WD40 repeat, conserved siteConserved Site
TA [auth p]IPR012972NLEDomain
TA [auth p]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
TA [auth p]IPR001680WD40 repeatRepeat
TA [auth p]IPR028599WD repeat WDR12/Ytm1Family
TA [auth p]IPR020472G-protein beta WD-40 repeatRepeat
TA [auth p]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
UA [auth q]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
UA [auth q]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
UA [auth q]IPR023267RNA (C5-cytosine) methyltransferaseFamily
UA [auth q]IPR011023Nop2pDomain
UA [auth q]IPR018314Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteConserved Site
UA [auth q]IPR031341Ribosomal RNA small subunit methyltransferase F, N-terminalDomain
UA [auth q]IPR023273RNA (C5-cytosine) methyltransferase, NOP2Family
UA [auth q]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
VA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
VA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
WA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
WA [auth s]IPR006073GTP binding domainDomain
WA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
WA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
WA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 8]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
E [auth 8]IPR000077Large ribosomal subunit protein eL39Family
E [auth 8]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
XA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
XA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
XA [auth t]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
XA [auth t]IPR039699Large ribosomal subunit protein uL30Family
XA [auth t]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
XA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
XA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
YA [auth u]IPR011017TRASH domainDomain
YA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
YA [auth u]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
YA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
ZA [auth v]IPR019002Ribosome biogenesis protein Nop16Family
AB [auth w]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
AB [auth w]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
AB [auth w]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
AB [auth w]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
AB [auth w]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
AB [auth w]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
BB [auth y]IPR002769Translation initiation factor IF6Family
CB [auth z]IPR019434Domain of unknown function DUF2423Domain
DB [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
DB [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
DB [auth T]IPR001147Large ribosomal subunit protein eL21Family
DB [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
F [auth A]IPR026532Ribosome biogenesis protein BRX1Family
F [auth A]IPR007109Brix domainDomain
G [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
G [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
G [auth B]IPR000597Large ribosomal subunit protein uL3Family
H [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
H [auth C]IPR002136Large ribosomal subunit protein uL4Family
H [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
H [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
H [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
I [auth D]IPR001650Helicase, C-terminal domain-likeDomain
I [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
I [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
I [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
I [auth D]IPR025313Domain of unknown function DUF4217Domain
I [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
I [auth D]IPR011545DEAD/DEAH box helicase domainDomain
I [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily