8ESC | pdb_00008esc

Structure of the Yeast NuA4 Histone Acetyltransferase Complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B SuperfamilyActin-like ATPases 8044481 3000092 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyActin-like ATPases 8044482 3000092 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]Actin_1ste8escA1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
C [auth A]Actin_2nde8escA2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)
B [auth R]Actin_1ste8escR1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_1stECOD (1.6)
B [auth R]Actin_2nde8escR2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Actin_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth A]3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth S]PF16282SANT/Myb-like domain of DAMP1 (SANT_DAMP1_like)SANT/Myb-like domain of DAMP1This domain, approximately 90 residues, is mainly found in DNA methyltransferase 1-associated protein 1 (DAMP1) that plays an important role in development and maintenace of genome integrity in various mammalia species [2,3]. It mainly consists of ta ...This domain, approximately 90 residues, is mainly found in DNA methyltransferase 1-associated protein 1 (DAMP1) that plays an important role in development and maintenace of genome integrity in various mammalia species [2,3]. It mainly consists of tandem repeats of three alpha-helices that are arranged in a helix-turn-helix motif and shows a structual similarity with SANT domain and Myb DNA-binding domain, indicating it contains a putative DNA binding site [1].
Domain
PF13921Myb-like DNA-binding domain (Myb_DNA-bind_6)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. Domain
PF07529HSA domain (HSA)HSA domain- Family
B [auth R]PF00022Actin (Actin)Actin- Family
A [auth Z]PF20175Tra1 HEAT repeat central region (Tra1_central)Tra1 HEAT repeat central region- Repeat
A [auth Z]PF20206Tra1 HEAT repeat ring region (Tra1_ring)Tra1 HEAT repeat ring region- Repeat
A [auth Z]PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
A [auth Z]PF02259FAT domain (FAT)FAT domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth S]SWR1-complex protein 4
Chromatin modification-related protein EAF1
D [auth P]Enhancer of polycomb-like protein 1-
C [auth A]Actin
B [auth R]Actin-related protein 4
A [auth Z]Transcription-associated protein 1-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth S]IPR009057Homedomain-like superfamilyHomologous Superfamily
F [auth S]IPR032563DAMP1, SANT/Myb-like domainDomain
F [auth S]IPR027109SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1Family
F [auth S]IPR001005SANT/Myb domainDomain
IPR009057Homedomain-like superfamilyHomologous Superfamily
IPR001005SANT/Myb domainDomain
IPR014012Helicase/SANT-associated domainDomain
D [auth P]IPR024943Enhancer of polycomb proteinFamily
D [auth P]IPR019542Enhancer of polycomb-like, N-terminalDomain
C [auth A]IPR020902Actin/actin-like conserved siteConserved Site
C [auth A]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
C [auth A]IPR004001Actin, conserved siteConserved Site
C [auth A]IPR004000Actin familyFamily
B [auth R]IPR020902Actin/actin-like conserved siteConserved Site
B [auth R]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
B [auth R]IPR004000Actin familyFamily
A [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
A [auth Z]IPR050517DNA Damage Response and Repair KinaseFamily
A [auth Z]IPR003152FATC domainDomain
A [auth Z]IPR003151PIK-related kinase, FATDomain
A [auth Z]IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
A [auth Z]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A [auth Z]IPR046805Tra1, HEAT repeat ring regionRepeat
A [auth Z]IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
A [auth Z]IPR046807Tra1, HEAT repeat central regionRepeat
A [auth Z]IPR014009PIK-related kinase, FAT domainDomain