8ERB | pdb_00008erb

Crystal structure of Fub7 in complex with vinylglycine ketimine

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Polyketide_cyc2	e8erbB1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
D	Polyketide_cyc2	e8erbD1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
E [auth G]	Polyketide_cyc2	e8erbG1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
H [auth I]	Polyketide_cyc2	e8erbI1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
J	Polyketide_cyc2	e8erbJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
M [auth N]	Polyketide_cyc2	e8erbN1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
P [auth K]	Polyketide_cyc2	e8erbK1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
O [auth L]	Polyketide_cyc2	e8erbL1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
N [auth E]	Polyketide_cyc2	e8erbE1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
L [auth Q]	Head-tail_con	e8erbQ1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Head-tail_con	ECOD (v294.1)
K [auth M]	Polyketide_cyc2	e8erbM1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
I [auth P]	Polyketide_cyc2	e8erbP1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
G [auth F]	Polyketide_cyc2	e8erbF1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
F [auth H]	Polyketide_cyc2	e8erbH1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
C	Polyketide_cyc2	e8erbC1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)
A	Polyketide_cyc2	e8erbA1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Polyketide_cyc2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	PF01053	Cys/Met metabolism PLP-dependent enzyme (Cys_Met_Meta_PP)	Cys/Met metabolism PLP-dependent enzyme	This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomose ...	This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	Sulfhydrylase FUB7	O-acetylhomoserine aminocarboxypropyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cysteine synthase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process L-cysteine metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process transsulfuration alpha-amino acid metabolic process L-amino acid metabolic process cysteine metabolic process proteinogenic amino acid metabolic process non-proteinogenic amino acid metabolic process homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process L-cysteine metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process transsulfuration alpha-amino acid metabolic process L-amino acid metabolic process cysteine metabolic process proteinogenic amino acid metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process non-proteinogenic amino acid biosynthetic process small molecule biosynthetic process L-amino acid biosynthetic process amino acid biosynthetic process sulfur compound biosynthetic process biosynthetic process serine family amino acid biosynthetic process L-homocysteine biosynthetic process sulfur amino acid biosynthetic process alpha-amino acid biosynthetic process L-cysteine biosynthetic process L-serine metabolic process proteinogenic amino acid biosynthetic process L-cysteine biosynthetic process from L-serine	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	IPR000277	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	Family
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	IPR054542	Cys/Met metabolism enzyme, pyridoxal-phosphate attachment site	Conserved Site
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A, B, C, D, E [auth G], A, B, C, D, E [auth G], F [auth H], G [auth F], H [auth I], I [auth P], J, K [auth M], L [auth Q], M [auth N], N [auth E], O [auth L], P [auth K]	IPR006235	O-acetylhomoserine/O-acetylserine sulfhydrylase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.