8EP9 | pdb_00008ep9

The capsid structure of Human Parvovirus 4

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CPSase_L_D2	e8ep9A1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
AA [auth a]	CPSase_L_D2	e8ep9a1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
AB [auth 1]	CPSase_L_D2	e8ep911	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
BA [auth b]	CPSase_L_D2	e8ep9b1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
CA [auth c]	CPSase_L_D2	e8ep9c1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
DB [auth 4]	CPSase_L_D2	e8ep941	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
F	CPSase_L_D2	e8ep9F1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
FA [auth f]	CPSase_L_D2	e8ep9f1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
FB [auth 6]	CPSase_L_D2	e8ep961	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
G	CPSase_L_D2	e8ep9G1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
GA [auth g]	CPSase_L_D2	e8ep9g1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
GB [auth 7]	CPSase_L_D2	e8ep971	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
H	CPSase_L_D2	e8ep9H1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
HA [auth h]	CPSase_L_D2	e8ep9h1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
I	CPSase_L_D2	e8ep9I1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
J	CPSase_L_D2	e8ep9J1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
L	CPSase_L_D2	e8ep9L1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
M	CPSase_L_D2	e8ep9M1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
MA [auth m]	CPSase_L_D2	e8ep9m1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
NA [auth n]	CPSase_L_D2	e8ep9n1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
OA [auth o]	CPSase_L_D2	e8ep9o1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
Q	CPSase_L_D2	e8ep9Q1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
QA [auth q]	CPSase_L_D2	e8ep9q1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
R	CPSase_L_D2	e8ep9R1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
S	CPSase_L_D2	e8ep9S1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
T	CPSase_L_D2	e8ep9T1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
TA [auth t]	CPSase_L_D2	e8ep9t1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
W	CPSase_L_D2	e8ep9W1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
WA [auth w]	CPSase_L_D2	e8ep9w1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
X	CPSase_L_D2	e8ep9X1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
XA [auth x]	CPSase_L_D2	e8ep9x1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
Y	CPSase_L_D2	e8ep9Y1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
Z	CPSase_L_D2	e8ep9Z1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
ZA [auth z]	CPSase_L_D2	e8ep9z1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
YA [auth y]	CPSase_L_D2	e8ep9y1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
VA [auth v]	CPSase_L_D2	e8ep9v1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
V	CPSase_L_D2	e8ep9V1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
UA [auth u]	CPSase_L_D2	e8ep9u1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
U	CPSase_L_D2	e8ep9U1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
SA [auth s]	CPSase_L_D2	e8ep9s1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
RA [auth r]	CPSase_L_D2	e8ep9r1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
PA [auth p]	CPSase_L_D2	e8ep9p1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
P	CPSase_L_D2	e8ep9P1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
O	CPSase_L_D2	e8ep9O1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
N	CPSase_L_D2	e8ep9N1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
LA [auth l]	CPSase_L_D2	e8ep9l1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
KA [auth k]	CPSase_L_D2	e8ep9k1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
K	CPSase_L_D2	e8ep9K1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
JA [auth j]	CPSase_L_D2	e8ep9j1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
IA [auth i]	CPSase_L_D2	e8ep9i1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
HB [auth 8]	CPSase_L_D2	e8ep981	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
EB [auth 5]	CPSase_L_D2	e8ep951	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
EA [auth e]	CPSase_L_D2	e8ep9e1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
E	CPSase_L_D2	e8ep9E1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
DA [auth d]	CPSase_L_D2	e8ep9d1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
D	CPSase_L_D2	e8ep9D1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
CB [auth 3]	CPSase_L_D2	e8ep931	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
C	CPSase_L_D2	e8ep9C1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
BB [auth 2]	CPSase_L_D2	e8ep921	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)
B	CPSase_L_D2	e8ep9B1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: CPSase_L_D2	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Human Parvovirus 4	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.