8EJ4 | pdb_00008ej4

Cryo-EM structure of the active NLRP3 inflammasome disk


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyProtein kinase-like (PK-like) 8062565 3000066 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGTP_EFTU_D2e8ej4A1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
BGTP_EFTU_D2e8ej4B1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
CGTP_EFTU_D2e8ej4C1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
DGTP_EFTU_D2e8ej4D1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
EGTP_EFTU_D2e8ej4E1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
FGTP_EFTU_D2e8ej4F1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
GGTP_EFTU_D2e8ej4G1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
HGTP_EFTU_D2e8ej4H1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
IGTP_EFTU_D2e8ej4I1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
JGTP_EFTU_D2e8ej4J1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
KGTP_EFTU_D2e8ej4K1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
LGTP_EFTU_D2e8ej4L1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
MGTP_EFTU_D2e8ej4M1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
NGTP_EFTU_D2e8ej4N1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
OGTP_EFTU_D2e8ej4O1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
PGTP_EFTU_D2e8ej4P1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
QGTP_EFTU_D2e8ej4Q1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
RGTP_EFTU_D2e8ej4R1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
SGTP_EFTU_D2e8ej4S1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)
TGTP_EFTU_D2e8ej4T1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: GTP_EFTU_D2ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF05729NACHT domain (NACHT)NACHT domainThis NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931. Domain
A, B, C, D, E
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
A, B, C, D, E
PF14484Fish-specific NACHT associated domain (FISNA)Fish-specific NACHT associated domain- Family
A, B, C, D, E
PF17776NLRC4 helical domain HD2 (NLRC4_HD2)NLRC4 helical domain HD2This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1]. Domain
A, B, C, D, E
PF17779NOD2 winged helix domain (WHD_NOD2)NOD2 winged helix domainThis winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known. Domain
K, L, M, N, O
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
NACHT, LRR and PYD domains-containing protein 3
K, L, M, N, O
Serine/threonine-protein kinase Nek7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR001611Leucine-rich repeatRepeat
A, B, C, D, E
IPR004020DAPIN domainDomain
A, B, C, D, E
IPR029495NACHT-associated domainDomain
A, B, C, D, E
IPR007111NACHT nucleoside triphosphataseDomain
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR041267NACHT, LRR and PYD domains-containing protein, helical domain HD2Domain
A, B, C, D, E
IPR041075NOD1/2, winged helix domainDomain
A, B, C, D, E
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR050637NLRP family, innate immunity and inflammation regulatorsFamily
K, L, M, N, O
IPR017441Protein kinase, ATP binding siteBinding Site
K, L, M, N, O
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
K, L, M, N, O
IPR000719Protein kinase domainDomain
K, L, M, N, O
IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
K, L, M, N, O
IPR008271Serine/threonine-protein kinase, active siteActive Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B, C, D, E
Q96P20
K, L, M, N, O
Q8TDX7