8EDG | pdb_00008edg

Cryo-EM structure of the Hermes transposase bound to two left-ends of its DNA transposon

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K [auth G]	SCOP2B Superfamily	Hermes dimerisation domain	8038725	3002013	SCOP2B (2022-06-29)
K [auth G]	SCOP2B Superfamily	Ribonuclease H-like	8038724	3000143	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	Ribonuclease H-like	8038724	3000143	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	Hermes dimerisation domain	8038725	3002013	SCOP2B (2022-06-29)
H [auth C]	SCOP2B Superfamily	Hermes dimerisation domain	8038725	3002013	SCOP2B (2022-06-29)
H [auth C]	SCOP2B Superfamily	Ribonuclease H-like	8038724	3000143	SCOP2B (2022-06-29)
G [auth A]	SCOP2B Superfamily	Ribonuclease H-like	8038724	3000143	SCOP2B (2022-06-29)
G [auth A]	SCOP2B Superfamily	Hermes dimerisation domain	8038725	3002013	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	PF10683	Hermes transposase DNA-binding domain (DBD_Tnp_Hermes)	Hermes transposase DNA-binding domain	This domain confers specific DNA-binding on Hermes transposase [1].	Domain
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	PF05699	hAT family C-terminal dimerisation region (Dimer_Tnp_hAT)	hAT family C-terminal dimerisation region	This dimerisation region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerisation region forms extremely stable dimers in vitro [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	Hermes transposase	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding protein binding protein dimerization activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
C [auth O], E [auth R]	DNA (55-MER)	-	-	-
B [auth N], D [auth Q]	DNA (46-MER)	-	-	-
A [auth M], F [auth P]	DNA (5'-D(GPCPGPTPGPAP*A)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	IPR052717	Vacuolar processing and transposase activity regulators	Family
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	IPR018473	Hermes trasposase, DNA-binding domain	Domain
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	IPR003656	Zinc finger, BED-type	Domain
G [auth A], H [auth C], I, J [auth E], K [auth G], G [auth A], H [auth C], I, J [auth E], K [auth G], L [auth K]	IPR008906	HAT, C-terminal dimerisation domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.