Cryo-EM structure of the in-situ gp4-gp10-gp9N from bacteriophage P22
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| R [auth Q] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| Q [auth P] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| P [auth O] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| O [auth N] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| N [auth M] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| M [auth L] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| L [auth K] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| K [auth J] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| J [auth I] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| I [auth H] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| H [auth G] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| F [auth E] | SCOP2B Superfamily | YqbG/phage connector protein-like | 8104062 | 3001980 | SCOP2B (2022-06-29) |
| Z [auth Y] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| Y [auth X] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| JA [auth i] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| IA [auth h] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| HA [auth g] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| GA [auth f] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| G [auth F] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| FA [auth e] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| EA [auth d] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| E [auth D] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| DA [auth c] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| CA [auth b] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| C [auth B] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| BA [auth a] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| B [auth A] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| AA [auth Z] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
| A [auth 0] | SCOP2B Superfamily | Head-binding domain of phage P22 tailspike protein | 8043159 | 3002008 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| R [auth Q] | Polyketide_cyc2 | e8eb7Q1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| Q [auth P] | Polyketide_cyc2 | e8eb7P1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| P [auth O] | Polyketide_cyc2 | e8eb7O1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| O [auth N] | Polyketide_cyc2 | e8eb7N1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| N [auth M] | Polyketide_cyc2 | e8eb7M1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| M [auth L] | Polyketide_cyc2 | e8eb7L1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| L [auth K] | Polyketide_cyc2 | e8eb7K1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| K [auth J] | Polyketide_cyc2 | e8eb7J1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| J [auth I] | Polyketide_cyc2 | e8eb7I1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| I [auth H] | Polyketide_cyc2 | e8eb7H1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| H [auth G] | Polyketide_cyc2 | e8eb7G1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| F [auth E] | SPRY,PRY | e8eb7E1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: SPRY,PRY | ECOD (v294.1) |
| Z [auth Y] | Polyketide_cyc2 | e8eb7Y1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| Y [auth X] | Polyketide_cyc2 | e8eb7X1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| JA [auth i] | Polyketide_cyc2 | e8eb7i1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| IA [auth h] | Polyketide_cyc2 | e8eb7h1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| HA [auth g] | Polyketide_cyc2 | e8eb7g1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| GA [auth f] | Polyketide_cyc2 | e8eb7f1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| G [auth F] | Polyketide_cyc2 | e8eb7F1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| FA [auth e] | Polyketide_cyc2 | e8eb7e1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| EA [auth d] | Polyketide_cyc2 | e8eb7d1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| E [auth D] | Polyketide_cyc2 | e8eb7D1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| DA [auth c] | Polyketide_cyc2 | e8eb7c1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| D [auth C] | Polyketide_cyc2 | e8eb7C1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| CA [auth b] | Polyketide_cyc2 | e8eb7b1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| C [auth B] | Polyketide_cyc2 | e8eb7B1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| BA [auth a] | Polyketide_cyc2 | e8eb7a1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| B [auth A] | Polyketide_cyc2 | e8eb7A1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| AA [auth Z] | Polyketide_cyc2 | e8eb7Z1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
| A [auth 0] | Polyketide_cyc2 | e8eb701 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Polyketide_cyc2 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| GA [auth f] | 2.170.14.10 | Mainly Beta | Beta Complex | Tailspike Protein | Chain | CATH (utative) |
| FA [auth e] | 2.170.14.10 | Mainly Beta | Beta Complex | Tailspike Protein | Chain | CATH (utative) |
| E [auth D] | 2.170.14.10 | Mainly Beta | Beta Complex | Tailspike Protein | Chain | CATH (utative) |
| D [auth C] | 2.170.14.10 | Mainly Beta | Beta Complex | Tailspike Protein | Chain | CATH (utative) |
| A [auth 0] | 2.170.14.10 | Mainly Beta | Beta Complex | Tailspike Protein | Chain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF11134 | Phage stabilisation protein (Phage_stabilise) | Phage stabilisation protein | - | Family | |
| PF11650 | P22 tail accessory factor (P22_Tail-4) | P22 tail accessory factor | - | Family | |
| PF09008 | Head binding (Head_binding) | Head binding | The head binding domain found in the Phage P22 tailspike protein contains two regular beta-sheets, A and B, oriented nearly perpendicular to each other and composed of five and three strands respectively. The topology of the strands is exclusively an ... | Domain | |
| PF09008 | Head binding (Head_binding) | Head binding | The head binding domain found in the Phage P22 tailspike protein contains two regular beta-sheets, A and B, oriented nearly perpendicular to each other and composed of five and three strands respectively. The topology of the strands is exclusively an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR021098 | Bacteriophage P22, Gp10, DNA-stabilising | Family | |
| IPR038258 | Peptidoglycan hydrolase Gp4 superfamily | Homologous Superfamily | |
| IPR020362 | Tail accessory factor GP4 | Family | |
| IPR012332 | Autotransporter, pectate lyase C-like domain superfamily | Homologous Superfamily | |
| IPR015331 | P22 tailspike C-terminal domain | Domain | |
| IPR036730 | Phage P22 tailspike-like, N-terminal domain superfamily | Homologous Superfamily | |
| IPR009093 | Bacteriophage P22 tailspike, N-terminal | Domain | |
| IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |














