Annotations: 8EA4

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P [auth S]	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8032375	3001284	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth S]	Ribosomal_S15_1	e8ea4S1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: Ribosomal_S15_1	ECOD (1.6)
A	CDC48	e8ea4A2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
A	AAA	e8ea4A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
B	CDC48	e8ea4B2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
B	AAA	e8ea4B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
C	CDC48	e8ea4C2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
C	AAA	e8ea4C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
D	CDC48	e8ea4D2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
D	AAA	e8ea4D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
E	CDC48	e8ea4E2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
E	AAA	e8ea4E1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
F	CDC48	e8ea4F2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
F	AAA	e8ea4F1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
G	CDC48	e8ea4G2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
G	AAA	e8ea4G1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
H	CDC48	e8ea4H2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
H	AAA	e8ea4H1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
I	CDC48	e8ea4I2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
I	AAA	e8ea4I1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
J	CDC48	e8ea4J2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
J	AAA	e8ea4J1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
K	CDC48	e8ea4K2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
K	AAA	e8ea4K1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
L	CDC48	e8ea4L2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
L	AAA	e8ea4L1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)
M	CDC48	e8ea4M2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: CDC48	ECOD (1.6)
M	AAA	e8ea4M1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
H	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
I	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	PF09299	Mu transposase, C-terminal (Mu-transpos_C)	Mu transposase, C-terminal	Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology [1].	Domain
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	PF13384	Homeodomain-like domain (HTH_23)	Homeodomain-like domain		Domain
P [auth S]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15		Domain
O [auth Q]	PF06527	TniQ (TniQ)	TniQ	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	PF05621	Bacterial TniB protein (TniB)	Bacterial TniB protein	This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [1] which is involved in Tn5053 mercury resistance transposition [2]. This entry represents a P-loop domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
N [auth O]	Cas12k	-	-	-
Z [auth 2]	LE_R	-	-	-
BA [auth 4]	RE_F	-	-	-
CA [auth 5]	RE_R1	-	-	-
EA [auth 7]	sg_RNA	-	-	-
AA [auth 3]	Non-target_R	-	-	-
Y [auth 1]	Target-LE	-	-	-
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	TnsB	binding nucleic acid binding	nucleobase-containing compound metabolic process metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process	-
P [auth S]	30S ribosomal protein S15	RNA binding binding rRNA binding nucleic acid binding small ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome
O [auth Q]	TniQ	-	-	-
DA [auth 6]	RE_R2	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	TnsC	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
N [auth O]	IPR049868	Type V CRISPR-associated protein Cas12k	Family
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	IPR009004	Transposase, Mu, C-terminal	Homologous Superfamily
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	IPR001584	Integrase, catalytic core	Domain
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], Q [auth W], R [auth X], S [auth Y], T [auth Z], U [auth w], V [auth x], W [auth y], X [auth z]	IPR015378	Transposase-like, Mu, C-terminal	Domain
P [auth S]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
P [auth S]	IPR000589	Small ribosomal subunit protein uS15	Family
P [auth S]	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
O [auth Q]	IPR009492	TniQ	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR008868	Bacterial TniB	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR052026	ExeA/AAA ATPase DNA-binding & secretion	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

8EA4 | pdb_00008ea4

V-K CAST Transpososome from Scytonema hofmanni, minor configuration

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

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V-K CAST Transpososome from Scytonema hofmanni, minor configuration

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

8EA4 | pdb_00008ea4