8EA3 | pdb_00008ea3

V-K CAST Transpososome from Scytonema hofmanni, major configuration

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth S]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
R [auth S]Ribosomal_S15_1e8ea3S1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
O [auth L]CDC48e8ea3L2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
O [auth L]AAAe8ea3L1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
N [auth K]CDC48e8ea3K2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
N [auth K]AAAe8ea3K1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
M [auth J]CDC48e8ea3J2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
M [auth J]AAAe8ea3J1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
L [auth I]CDC48e8ea3I2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
L [auth I]AAAe8ea3I1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
K [auth H]CDC48e8ea3H2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
K [auth H]AAAe8ea3H1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
J [auth G]CDC48e8ea3G2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
J [auth G]AAAe8ea3G1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
I [auth F]CDC48e8ea3F2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
I [auth F]AAAe8ea3F1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
H [auth E]CDC48e8ea3E2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
H [auth E]AAAe8ea3E1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
G [auth D]CDC48e8ea3D2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
G [auth D]AAAe8ea3D1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
F [auth C]CDC48e8ea3C2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
F [auth C]AAAe8ea3C1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
E [auth B]CDC48e8ea3B2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
E [auth B]AAAe8ea3B1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)
D [auth A]CDC48e8ea3A2 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
D [auth A]AAAe8ea3A1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAAECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth H]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
J [auth G]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)
G [auth D]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13384Homeodomain-like domain (HTH_23)Homeodomain-like domainDomain
PF09299Mu transposase, C-terminal (Mu-transpos_C)Mu transposase, C-terminalMembers of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology [1]. Domain
R [auth S]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
PF06527TniQ (TniQ)TniQ- Family
PF05621Bacterial TniB protein (TniB)Bacterial TniB proteinThis family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [1] which is involved in Tn5053 mercury resistance transposition [2]. This entry represents a P-loop domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AA [auth 2]LE_R---
TnsB -
R [auth S]30S ribosomal protein S15
TniQ- - -
P [auth O]Cas12k- - -
TnsC- - -
C [auth 7]sg_RNA---
B [auth 3]Non-target_R---
DA [auth 6]RE_R2---
CA [auth 5]RE_R1---
BA [auth 4]RE_F---
A [auth 1]Target_LE---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036397Ribonuclease H superfamilyHomologous Superfamily
IPR009057Homedomain-like superfamilyHomologous Superfamily
IPR009004Transposase, Mu, C-terminalHomologous Superfamily
IPR001584Integrase, catalytic coreDomain
IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
IPR015378Transposase-like, Mu, C-terminalDomain
R [auth S]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth S]IPR000589Small ribosomal subunit protein uS15Family
R [auth S]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
IPR009492TniQDomain
P [auth O]IPR049868Type V CRISPR-associated protein Cas12kFamily
IPR008868Bacterial TniBFamily
IPR052026ExeA/AAA ATPase DNA-binding & secretionFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily