8E5L

Escherichia coli Rho-dependent transcription pre-termination complex containing 21 nt long RNA spacer, Mg-ADP-BeF3, and NusG; Rho hexamer part

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth c]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
D [auth c]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
D [auth c]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
E [auth b]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
E [auth b]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
E [auth b]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
F [auth a]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
B [auth e]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
B [auth e]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
B [auth e]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
C [auth f]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
C [auth f]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
C [auth f]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)
G [auth d]	SCOP2B Superfamily	Rho N-terminal domain-like	8057372	3001774	SCOP2B (2022-06-29)
G [auth d]	SCOP2B Superfamily	RecA-like P-loop NTPases	8057376	3002019	SCOP2B (2022-06-29)
G [auth d]	SCOP2B Superfamily	Nucleic acid-binding proteins	8057374	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth c]	PF07497	e8e5lc1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF07497	ECOD (1.6)
D [auth c]	PF07498	e8e5lc2	A: alpha arrays	X: LEM/SAP HeH motif-like	H: LEM/SAP HeH motif	T: LEM/SAP HeH motif	F: PF07498	ECOD (1.6)
D [auth c]	PF00006	e8e5lc3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00006	ECOD (1.6)
E [auth b]	PF07497	e8e5lb1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF07497	ECOD (1.6)
E [auth b]	PF07498	e8e5lb3	A: alpha arrays	X: LEM/SAP HeH motif-like	H: LEM/SAP HeH motif	T: LEM/SAP HeH motif	F: PF07498	ECOD (1.6)
E [auth b]	PF00006	e8e5lb2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00006	ECOD (1.6)
F [auth a]	PF07497	e8e5la2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF07497	ECOD (1.6)
F [auth a]	PF07498	e8e5la3	A: alpha arrays	X: LEM/SAP HeH motif-like	H: LEM/SAP HeH motif	T: LEM/SAP HeH motif	F: PF07498	ECOD (1.6)
F [auth a]	PF00006	e8e5la1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00006	ECOD (1.6)
B [auth e]	PF07497	e8e5le2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF07497	ECOD (1.6)
B [auth e]	PF07498	e8e5le1	A: alpha arrays	X: LEM/SAP HeH motif-like	H: LEM/SAP HeH motif	T: LEM/SAP HeH motif	F: PF07498	ECOD (1.6)
B [auth e]	PF00006	e8e5le3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00006	ECOD (1.6)
C [auth f]	PF07497	e8e5lf3	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF07497	ECOD (1.6)
C [auth f]	PF07498	e8e5lf1	A: alpha arrays	X: LEM/SAP HeH motif-like	H: LEM/SAP HeH motif	T: LEM/SAP HeH motif	F: PF07498	ECOD (1.6)
C [auth f]	PF00006	e8e5lf2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00006	ECOD (1.6)
G [auth d]	PF07497	e8e5ld2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF07497	ECOD (1.6)
G [auth d]	PF07498	e8e5ld1	A: alpha arrays	X: LEM/SAP HeH motif-like	H: LEM/SAP HeH motif	T: LEM/SAP HeH motif	F: PF07498	ECOD (1.6)
G [auth d]	PF00006	e8e5ld3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00006	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	PF07498	Rho termination factor, N-terminal domain (Rho_N)	Rho termination factor, N-terminal domain	The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [1]. This domain is found to the N- ...	The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [1]. This domain is found to the N-terminus of the RNA binding domain (Pfam:PF07497).	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	PF07497	Rho termination factor, RNA-binding domain (Rho_RNA_bind)	Rho termination factor, RNA-binding domain	The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 7]	RNA with 21 nt long spacer	-	-	-
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	Transcription termination factor Rho	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity ATP-dependent activity, acting on RNA pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides RNA binding nucleic acid binding identical protein binding protein binding	cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription organic cyclic compound metabolic process nucleic acid biosynthetic process organic substance metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR004665	Transcription termination factor Rho	Family
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR011112	Rho termination factor, N-terminal	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR003593	AAA+ ATPase domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR011129	Cold shock domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR036269	Rho termination factor, N-terminal domain superfamily	Homologous Superfamily
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR011113	Rho termination factor, RNA-binding domain	Domain
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], B [auth e], C [auth f], D [auth c], E [auth b], F [auth a], G [auth d]	IPR041703	Transcription termination factor Rho, ATP binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.