8E44

E. coli 50S ribosome bound to antibiotic analog SLC09


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)
G [auth O]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
H [auth P]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
I [auth Q]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth R]PF00468e8e44R1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
C [auth K]PF00181e8e44K2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
C [auth K]PF03947e8e44K1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
D [auth L]PF00828e8e44L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
E [auth M]PF00573e8e44M1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth N]PF00297e8e44N1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
G [auth O]PF00572e8e44O1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
H [auth P]PF00237e8e44P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
I [auth Q]PF01783e8e44Q1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth R]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
C [auth K]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
C [auth K]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
D [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
E [auth M]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth N]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
G [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
I [auth Q]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth I]23S ribosomal RNA---
J [auth R]50S ribosomal protein L34
B [auth J]5S ribosomal RNA---
C [auth K]50S ribosomal protein L2
D [auth L]50S ribosomal protein L15
E [auth M]50S ribosomal protein L4
F [auth N]50S ribosomal protein L3
G [auth O]50S ribosomal protein L13
H [auth P]50S ribosomal protein L22
I [auth Q]50S ribosomal protein L32

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth R]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
J [auth R]IPR000271Large ribosomal subunit protein bL34Family
C [auth K]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth K]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth K]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth K]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth K]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth K]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth K]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth K]IPR002171Large ribosomal subunit protein uL2Family
D [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
D [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
D [auth L]IPR030878Large ribosomal subunit protein uL15Family
D [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
D [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
E [auth M]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth M]IPR002136Large ribosomal subunit protein uL4Family
E [auth M]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth N]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth N]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
F [auth N]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth N]IPR000597Large ribosomal subunit protein uL3Family
G [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth O]IPR005822Large ribosomal subunit protein uL13Family
G [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth O]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
H [auth P]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
H [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
H [auth P]IPR001063Large ribosomal subunit protein uL22Family
H [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
H [auth P]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
I [auth Q]IPR002677Large ribosomal subunit protein bL32Family
I [auth Q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
I [auth Q]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily