8E40
Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Core binding factor beta CBF | 8042548 | 3001169 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF00559 | e8e40B1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
A | PF18782 | e8e40A2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF18782 | ECOD (1.6) |
C | PF02312 | e8e40C1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00559 | Retroviral Vif (Viral infectivity) protein (Vif) | Retroviral Vif (Viral infectivity) protein | - | Family | |
PF18782 | Novel AID APOBEC clade 2 (NAD2) | Novel AID APOBEC clade 2 | - | Family | |
PF18750 | Secreted Novel AID/APOBEC-like Deaminase 4 (SNAD4) | Secreted Novel AID/APOBEC-like Deaminase 4 | - | Family | |
PF02312 | Core binding factor beta subunit (CBF_beta) | Core binding factor beta subunit | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000475 | Retroviral Vif (Viral infectivity) protein | Family | |
IPR016193 | Cytidine deaminase-like | Homologous Superfamily | |
IPR002125 | Cytidine and deoxycytidylate deaminase domain | Domain | |
IPR016192 | APOBEC/CMP deaminase, zinc-binding | Binding Site | |
IPR003417 | Core-binding factor, beta subunit | Family | |
IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily |