8E00

Symmetry expansion of yeast cytoplasmic dynein-1 bound to Lis1 in the chi conformation.

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF00400	e8e00B1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)
C	PF00400	e8e00C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00400	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Dynein heavy chain, cytoplasmic	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding dynein light intermediate chain binding protein binding microtubule motor activity cytoskeletal motor activity minus-end-directed microtubule motor activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity dynein intermediate chain binding	establishment of organelle localization cellular localization organelle transport along microtubule transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport establishment of organelle localization cellular localization organelle transport along microtubule transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process nuclear migration organelle fusion cellular component organization organelle organization nucleus organization karyogamy cellular component organization or biogenesis microtubule cytoskeleton organization spindle localization mitotic cell cycle establishment of mitotic spindle localization mitotic cell cycle process establishment of spindle localization cell cycle microtubule cytoskeleton organization involved in mitosis cytoskeleton organization cell cycle process mitotic nuclear division organelle fission chromosome organization sister chromatid segregation nuclear division mitotic sister chromatid segregation nuclear chromosome segregation chromosome segregation cytoplasmic microtubule organization supramolecular fiber organization establishment or maintenance of cell polarity establishment of spindle orientation establishment of cell polarity establishment of mitotic spindle orientation mitotic spindle organization spindle organization	cell periphery cell cortex intracellular anatomical structure cytoplasm cellular anatomical entity polymeric cytoskeletal fiber spindle aster astral microtubule spindle microtubule cytoplasmic microtubule intracellular organelle cytoskeleton organelle cell periphery cell cortex intracellular anatomical structure cytoplasm cellular anatomical entity polymeric cytoskeletal fiber spindle aster astral microtubule spindle microtubule cytoplasmic microtubule intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton non-membrane-bounded organelle microtubule organizing center spindle pole body protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex
B, C	Nuclear distribution protein PAC1	cytoskeletal protein binding microtubule plus-end binding microtubule binding protein binding binding tubulin binding identical protein binding protein-containing complex binding dynein complex binding	positive regulation of protein binding regulation of binding biological regulation positive regulation of binding regulation of microtubule plus-end binding positive regulation of microtubule plus-end binding regulation of protein binding regulation of molecular function positive regulation of molecular function positive regulation of microtubule binding regulation of microtubule binding establishment of organelle localization cellular localization organelle transport along microtubule positive regulation of protein binding regulation of binding biological regulation positive regulation of binding regulation of microtubule plus-end binding positive regulation of microtubule plus-end binding regulation of protein binding regulation of molecular function positive regulation of molecular function positive regulation of microtubule binding regulation of microtubule binding establishment of organelle localization cellular localization organelle transport along microtubule transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport cellular process microtubule-based movement microtubule-based process nuclear migration cell division vesicle cytoskeletal trafficking vesicle localization establishment of vesicle localization vesicle transport along microtubule cellular component organization organelle organization microtubule organizing center organization microtubule cytoskeleton organization cellular component organization or biogenesis cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation cell cycle microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of cell polarity mitotic cell cycle process establishment of mitotic spindle orientation microtubule sliding	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle organelle envelope nuclear envelope nucleus intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle organelle envelope nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome polymeric cytoskeletal fiber cytoplasmic microtubule supramolecular fiber microtubule supramolecular polymer protein-containing complex microtubule associated complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR026983	Dynein heavy chain	Family
A	IPR013602	Dynein heavy chain, linker	Domain
A	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR041658	Dynein heavy chain AAA lid domain	Domain
A	IPR041589	Dynein heavy chain 3, AAA+ lid domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
A	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
A	IPR042219	Dynein heavy chain AAA lid domain superfamily	Homologous Superfamily
A	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
A	IPR013594	Dynein heavy chain, tail	Domain
A	IPR048404	DYN1, AAA+ ATPase lid domain	Domain
A	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
A	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
A	IPR004273	Dynein heavy chain region D6 P-loop domain	Domain
A	IPR024317	Dynein heavy chain, AAA module D4	Domain
B, C	IPR019775	WD40 repeat, conserved site	Conserved Site
B, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B, C	IPR001680	WD40 repeat	Repeat
B, C	IPR017252	Dynein regulator LIS1	Family
B, C	IPR020472	G-protein beta WD-40 repeat	Repeat
B, C	IPR037190	LIS1, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8E00

Symmetry expansion of yeast cytoplasmic dynein-1 bound to Lis1 in the chi conformation.

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage