8DZ4 | pdb_00008dz4

Cryo-EM structure of 356 Fab in complex with recombinant shortened Plasmodium falciparum circumsporozoite protein (rsCSP)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
W [auth Y]	e8dz4Y1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
U [auth W]	e8dz4W1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
S [auth U]	e8dz4U1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
Q [auth S]	e8dz4S1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
O [auth Q]	e8dz4Q1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
M [auth O]	e8dz4O1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
K [auth M]	e8dz4M1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
I [auth E]	e8dz4E1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
G [auth C]	e8dz4C1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
E [auth A]	e8dz4A1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
C [auth H]	e8dz4H1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Pico_P2A	F:	ECOD (20:10:01)
V [auth Z]	e8dz4Z1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
T [auth X]	e8dz4X1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
R [auth V]	e8dz4V1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
P [auth T]	e8dz4T1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
N [auth R]	e8dz4R1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
L [auth P]	e8dz4P1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
J [auth N]	e8dz4N1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
H [auth F]	e8dz4F1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
F [auth D]	e8dz4D1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
D [auth B]	e8dz4B1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cullin_AB	F:	ECOD (20:10:01)
B [auth L]	e8dz4L1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Pico_P2A	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
W [auth Y]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
U [auth W]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
S [auth U]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
Q [auth S]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
O [auth Q]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
M [auth O]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
K [auth M]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
I [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
G [auth C]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
E [auth A]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
V [auth Z]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
T [auth X]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
R [auth V]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
P [auth T]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
N [auth R]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
L [auth P]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
J [auth N]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
H [auth F]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
F [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
D [auth B]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
B [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
C [auth H], E [auth A], G [auth C], I [auth E], K [auth M], C [auth H], E [auth A], G [auth C], I [auth E], K [auth M], M [auth O], O [auth Q], Q [auth S], S [auth U], U [auth W], W [auth Y]	Heavy Chain	IGHV3	-	circumsporozoite protein	SAbDab (2026-03-13)
B [auth L], D [auth B], F [auth D], H [auth F], J [auth N], B [auth L], D [auth B], F [auth D], H [auth F], J [auth N], L [auth P], N [auth R], P [auth T], R [auth V], T [auth X], V [auth Z]	Light Chain	IGKV3	Kappa	circumsporozoite protein	SAbDab (2026-03-13)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth H], E [auth A], G [auth C], I [auth E], K [auth M], C [auth H], E [auth A], G [auth C], I [auth E], K [auth M], M [auth O], O [auth Q], Q [auth S], S [auth U], U [auth W], W [auth Y]	356 Fab heavy chain	-	-	-
B [auth L], D [auth B], F [auth D], H [auth F], J [auth N], B [auth L], D [auth B], F [auth D], H [auth F], J [auth N], L [auth P], N [auth R], P [auth T], R [auth V], T [auth X], V [auth Z]	356 Fab light chain	-	-	-
A [auth I]	Circumsporozoite protein	host cell surface binding binding protein binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding	biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell viral process viral life cycle entry into host cell by a symbiont-containing vacuole	cell surface cellular anatomical structure membrane side of membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I]	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
A [auth I]	IPR003067	Plasmodium circumsporozoite protein	Family
A [auth I]	IPR051860	Plasmodium Circumsporozoite Invasion Protein	Family
A [auth I]	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily