8DVE

RyR1 in presence of IpCa-T26E phosphomimetic and activating ligands


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth E]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
C [auth F]SCOP2B SuperfamilyEF-hand8033438 3001983 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyEF-hand8033438 3001983 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyEF-hand8033438 3001983 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyEF-hand8033438 3001983 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth E]PF00254e8dveE1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
E [auth B]PF00254e8dveB1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
HPF00254e8dveH1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
KPF00254e8dveK1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: PF00254ECOD (1.6)
C [auth F]PF00036e8dveF2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF00036ECOD (1.6)
C [auth F]PF13499e8dveF1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
F [auth C]PF00036e8dveC2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF00036ECOD (1.6)
F [auth C]PF13499e8dveC1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
IPF00036e8dveI1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF00036ECOD (1.6)
IPF13499e8dveI2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)
LPF00036e8dveL2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF00036ECOD (1.6)
LPF13499e8dveL1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D],
D [auth A],
G,
J
PF00622SPRY domain (SPRY)SPRY domain- Family
A [auth D],
D [auth A],
G,
J
PF08454RyR and IP3R Homology associated (RIH_assoc)RyR and IP3R Homology associated- Repeat
A [auth D],
D [auth A],
G,
J
PF02815MIR domain (MIR)MIR domainThe MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1].Domain
A [auth D],
D [auth A],
G,
J
PF08709Inositol 1,4,5-trisphosphate/ryanodine receptor (Ins145_P3_rec)Inositol 1,4,5-trisphosphate/ryanodine receptorThis domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-ga ...This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum discriminate between different types of neuronal activity [1].
Domain
A [auth D],
D [auth A],
G,
J
PF21119Ryanodine receptor junctional solenoid repeat (RYDR_Jsol)Ryanodine receptor junctional solenoid repeatThis entry represents a region of the Ryanodine receptor composed of alpha helical ARM repeats [1]. This region has been termed the Junctional solenoid region (Jsol) [1].Domain
A [auth D],
D [auth A],
G,
J
PF01365RIH domain (RYDR_ITPR)RIH domain- Repeat
A [auth D],
D [auth A],
G,
J
PF02026RyR domain (RyR)RyR domain- Family
B [auth E],
E [auth B],
H,
K
PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomerase- Domain
C [auth F],
F [auth C],
I,
L
PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pair- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
D [auth A],
G,
J
Ryanodine receptor 1
B [auth E],
E [auth B],
H,
K
Peptidyl-prolyl cis-trans isomerase FKBP1B
C [auth F],
F [auth C],
I,
L
Calmodulin-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D],
D [auth A],
G,
J
IPR036300Mir domain superfamilyHomologous Superfamily
A [auth D],
D [auth A],
G,
J
IPR000699RIH domainDomain
A [auth D],
D [auth A],
G,
J
IPR013662RyR/IP3R Homology associated domainDomain
A [auth D],
D [auth A],
G,
J
IPR016093MIR motifDomain
A [auth D],
D [auth A],
G,
J
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A [auth D],
D [auth A],
G,
J
IPR003877SPRY domainDomain
A [auth D],
D [auth A],
G,
J
IPR001870B30.2/SPRY domainDomain
A [auth D],
D [auth A],
G,
J
IPR009460Ryanodine Receptor TM 4-6Domain
A [auth D],
D [auth A],
G,
J
IPR015925Ryanodine/Inositol 1,4,5-trisphosphate receptorFamily
A [auth D],
D [auth A],
G,
J
IPR048581Ryanodine receptor, junctional solenoid domainDomain
A [auth D],
D [auth A],
G,
J
IPR035910RyR/IP3 receptor binding core, RIH domain superfamilyHomologous Superfamily
A [auth D],
D [auth A],
G,
J
IPR003032Ryanodine receptor RyrDomain
A [auth D],
D [auth A],
G,
J
IPR035761Ryanodine receptor, SPRY domain 1Domain
A [auth D],
D [auth A],
G,
J
IPR014821Inositol 1,4,5-trisphosphate/ryanodine receptorDomain
A [auth D],
D [auth A],
G,
J
IPR035764Ryanodine receptor, SPRY domain 2Domain
A [auth D],
D [auth A],
G,
J
IPR013333Ryanodine receptorFamily
A [auth D],
D [auth A],
G,
J
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
A [auth D],
D [auth A],
G,
J
IPR011992EF-hand domain pairHomologous Superfamily
A [auth D],
D [auth A],
G,
J
IPR005821Ion transport domainDomain
A [auth D],
D [auth A],
G,
J
IPR035762Ryanodine receptor, SPRY domain 3Domain
B [auth E],
E [auth B],
H,
K
IPR046357Peptidyl-prolyl cis-trans isomerase domain superfamilyHomologous Superfamily
B [auth E],
E [auth B],
H,
K
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainDomain
C [auth F],
F [auth C],
I,
L
IPR002048EF-hand domainDomain
C [auth F],
F [auth C],
I,
L
IPR018247EF-Hand 1, calcium-binding siteBinding Site
C [auth F],
F [auth C],
I,
L
IPR011992EF-hand domain pairHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth E],
E [auth B],
H,
K
PharosP68106
C [auth F],
F [auth C],
I,
L
PharosP0DP23